Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_1239 |
Symbol | |
ID | 4309412 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 1352823 |
End bp | 1354037 |
Gene Length | 1215 bp |
Protein Length | 404 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 638149048 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_773131 |
Protein GI | 115351292 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCGTC ATACTGCCCG TTCGATCAGC CACGCCACGC CGAAGATCGC CGCGACGATC GCGCTGTCGT GCGCGCTGCA CGGAGCCGCG TGGGCCGATT GCCTCGACGA CGCAGCCACG TTCCAGCACG TGAGCGTGAG CCTGTTGCGC GGCATCGCGC AGGTCGAATC GGGGATGAAT CCGAACGCGA TCAACACGAA CACGAACGGC ACCGTCGACA TCGGCCTGAT GCAGATCAAC AGCACCTGGC TGCCGACGCT CGCGCGCGAA GGCATCACGC GGGAAAGCCT GTTCGATGCG TGCACCAACG CGTACGTCGG CGCGTGGATC CTGTCGCAGA ACATCCGCCA GCTCGGCGCC AACTGGACCG CGATCGGCGC GTACAACGCC GCGTCGCCCG ACAAGCGCCT CGCGTATGCC CGCAAGGTCT ATGATGCAAT CCGGACCATG CCGGATTCGC CGGATACTCC CATGCCCATC CTGCCTCCTT CCTTTACGCC GCCGCAGCAG GTGCAGGCGT ACAACCCGTT CGCGAGCCTG AGCGTATCCG CGCCGCCGGC CGCACGGGCC CGCACGCTGT CACCGGCCGC CCCGCCGCCG CCGCAAGGCG GTCCCGCCGG CCCGGCCGGC ACGTACAACT TCGGCTGGAC CGTCACGGGC GCCGACCAGG CCAAGCCGAC CCAGGTGTTC GACGACGGCG CGCGGATCTA CGTGCAGTTC AGCGACATGA AGCATATGCC GGCGATCTTC ACCGAAACGT CGTCCGGCCG CGTGCTGATG TCGTGGGAGC TGCAGTTCCC GTATGCCGTT CTGACGCGCC CCGCGCAAAC GTTGATCTTC CAGCTCGGGC CGTTCGAGGC GCGCGCGCAG CGCGGCGCGG CGGGTGCAAC GACGCAGGCA GGAGCTGGCG CGGCGGCGGG AGCATCACGT TCGGGGGCAA CGACGGCTGC CACGACGCCT GCGGGGAAAC CGCACGCGAA TGCATCGGCC AAGCGCACGG CGTCGGCCGA CGCGCTGTGG TATCTGAACA CGCCGTCGAC ATCGGGATCG GCAGCGACGG CGAATACCGC CCCAACGACA ACCTCGTCGG CGTCGTCGAA CACGCCGGCC ACGTGGCCCA CCGCGGTGAC GTCGAATACG CCGCCGCCGG CCGCCACACC TCAGGCGCCA GCCGCGCGCG TCAGCACCGA CGCGCTCTGG TATATCTCGA AGTAA
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Protein sequence | MPRHTARSIS HATPKIAATI ALSCALHGAA WADCLDDAAT FQHVSVSLLR GIAQVESGMN PNAINTNTNG TVDIGLMQIN STWLPTLARE GITRESLFDA CTNAYVGAWI LSQNIRQLGA NWTAIGAYNA ASPDKRLAYA RKVYDAIRTM PDSPDTPMPI LPPSFTPPQQ VQAYNPFASL SVSAPPAARA RTLSPAAPPP PQGGPAGPAG TYNFGWTVTG ADQAKPTQVF DDGARIYVQF SDMKHMPAIF TETSSGRVLM SWELQFPYAV LTRPAQTLIF QLGPFEARAQ RGAAGATTQA GAGAAAGASR SGATTAATTP AGKPHANASA KRTASADALW YLNTPSTSGS AATANTAPTT TSSASSNTPA TWPTAVTSNT PPPAATPQAP AARVSTDALW YISK
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