Gene Bamb_1101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_1101 
Symbol 
ID4309676 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp1209585 
End bp1210865 
Gene Length1281 bp 
Protein Length426 aa 
Translation table11 
GC content69% 
IMG OID638148909 
Productdiguanylate phosphodiesterase 
Protein accessionYP_772994 
Protein GI115351155 
COG category[T] Signal transduction mechanisms 
COG ID[COG2200] FOG: EAL domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCCT CCCGCGAGCT CTCGCTCGAA TCCCTGCTCG AACGCCTCAC GCCGACGCCC 
AGCGGCTGGA TCGCCACGTA TCGCGACACG ACGCTGCGCA GCGTGTTCCA ACCCGTGCTG
TCGATCACGC ACAAGCGCGT GGTCGGCTAC GAAGCGCTGC TGCGCGTCGT GGACGCGAAC
GGCACGCTGG TGTCGCCGGT CGCACTGTTC GACAAGACGC GCGCGGCCGC CGACGCGTTG
CTGCTCGACC GGCTCGCGCG CTGCCTGCAT ACGGCCAACT TCGTCGCGCA AGGCATCGGC
GACGGCTGGC TGTTCCTGAA CGTGACGCCG CGCGTGCTCG ATTCGGGCCT CGTGCAGCGC
GAATTCGTCG AGGCGCTGTG CCGGCATTTC GCACTGCCGC CGAACCGCAT CGTGCTGGAA
GTCGTCGAGC AGCCGTCGCG CGACGAGGCC GCGCTCGCCC GCACGATCGA CATGATCCAG
CATCGCGACT TCCTGATCGC GATCGACGAT TTCGGCACCG GATTCTCGAA TTTCGACCGC
GTGTGGCGCG CACGGCCGGA TATCGTCAAG CTCGACCGCT CGCTCGTCGA ACGCGCGACC
GGCTCGGGCG AGGATCGCCG CATCATGCAT CACCTGGTAT CGATGCTCCA CCAGGCCGGC
GCGATGGTGC TCGCCGAGGG TGTCGAAAAC GACGACGCAC TGCAGGCGCT GATGGACGCC
GATATCGATT TCGTCCAGGG CTTCCAGTTC GGCCAGCCCG ATGGATCGAT CGCACATGCG
AGCGCCGCGG CGCCCGCGAT GCTCGATGCC GCGTGGCAGC GTTTCATCGC GCAGCGGCAT
ACGCCGGGGA GCGCCGAGCA GCCGGGCTTC GACGCGATCG AGCGGCTCGT GCTCGCCGGC
GCGGCCGCGT TTTCCGCAAG CGGCGACCTG AACGACGCCG CCCAGCGCGT CTTCACGGTG
CCGGCCGCGC GCCGCGTGTT CGTCACGGAC GAGATCGGCG AACAGTTCCT GCCGTCGATC
GGCGCCCCCC CCGAGGACGG CCAGGCGGGC GGCACCCGGC TCTCGCCGCT GTTTCCGGAA
ACGCACAGCA ACTGGTCGCG ACGCCCGTAC TTCCAGCGCG CAATCGCTGC GCCGGGACGC
GTCGCGTTGA TGGGCCCGCA CTTCTCGCTG ACCGAAGGCC GCGACTGCTA TACCGCGGCG
GTCGCGATTC GCGCGCAAAG CCGCCTCGTC GTGTTCTGCG TCGACTTCGT GCTGGACAGC
GCGGGCACCG TGATGCGGTA G
 
Protein sequence
MKASRELSLE SLLERLTPTP SGWIATYRDT TLRSVFQPVL SITHKRVVGY EALLRVVDAN 
GTLVSPVALF DKTRAAADAL LLDRLARCLH TANFVAQGIG DGWLFLNVTP RVLDSGLVQR
EFVEALCRHF ALPPNRIVLE VVEQPSRDEA ALARTIDMIQ HRDFLIAIDD FGTGFSNFDR
VWRARPDIVK LDRSLVERAT GSGEDRRIMH HLVSMLHQAG AMVLAEGVEN DDALQALMDA
DIDFVQGFQF GQPDGSIAHA SAAAPAMLDA AWQRFIAQRH TPGSAEQPGF DAIERLVLAG
AAAFSASGDL NDAAQRVFTV PAARRVFVTD EIGEQFLPSI GAPPEDGQAG GTRLSPLFPE
THSNWSRRPY FQRAIAAPGR VALMGPHFSL TEGRDCYTAA VAIRAQSRLV VFCVDFVLDS
AGTVMR