| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0988 |
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| Symbol | |
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| ID | 4311492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 1079542 |
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| End bp | 1080546 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638148792 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_772881 |
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| Protein GI | 115351042 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGAGT TAGGCAAAAT ATCCCAGAAT TCAGTCGCAA GCGGCCAGGT ATCGATGCTC
GAGATCGACG AAAACTCGGC CGGTCAGCGG ATCGACAACT TCCTGTTGCG CGTCTGCAAA
GGCGTGCCCA AAAGCCATAT TTACCGGATC CTGCGCAGCG GCGAAGTGCG CGTGAATAAG
GGTCGGGTCG ATGCCCAGTA CCGCCTCGCG TTCGGCGACA TCGTCCGCGT GCCGCCCGTG
CGGGTGGCGG CGGCCGATCT AGCGCGCGCC GACACGCCGA TCGTGCCGCC CGCGCAGTTC
GAGGTGCTGT ACGAAGACGA TGCGATGCTC GTCATCAACA AGCCGGCCGG CGTCGCGGTG
CACGGCGGCA GCGGCGTCGC GTTCGGCGTG ATCGAGCAGA TGCGCCAGGC GCGTCCGCGC
GCGAAATTCC TCGAACTCGT GCACCGGCTC GACCGCGAGA CGTCCGGGAT CCTGATGCTC
GCGAAGAAGC GCACGGCGCT CGTCGGCCTG CACGAGCAGA TCCGCGAAAA CCGGATGGAC
AAGCGTTACT TCGCGTGCGG ACACGGCGAG TGGCAGTCCG ACTGGGGCCG CCGCCGCGCG
GTGAAGGCGC CGCTGTTCAA GTATTCGACC GCGGAAGGGG AGCGGCGCGT GCGCGTGCAG
GACGACGGCC TGCCGTCGCA CACGGTGTTC AACCTGCTCG AGCGCTGGCC GGATTACGCG
CTGGTCGAAG CGGAACTCAA AACGGGCCGG ACCCATCAGA TCCGTGTGCA CCTCGCGCAT
CTCGGCCTGC CGATCGCCGG CGACGCCAAG TATGGCGATT TCGCACTGAA CAAGGCGCTG
GCGCGCGCGA ACGCGCAGCC GTCGCTGAAA CGGATGTTCC TGCATGCGCA CCGGCTGAAG
CTCGCGCACC CGCTGACCGG CGAGCCGCTG CAGTTCGACG CGCCGCTGCC GGACGAGTGC
CGGCGCTTCC TCGATCAACT CAGCGCTTTG CGCGATAACG CATGA
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| Protein sequence | MNELGKISQN SVASGQVSML EIDENSAGQR IDNFLLRVCK GVPKSHIYRI LRSGEVRVNK
GRVDAQYRLA FGDIVRVPPV RVAAADLARA DTPIVPPAQF EVLYEDDAML VINKPAGVAV
HGGSGVAFGV IEQMRQARPR AKFLELVHRL DRETSGILML AKKRTALVGL HEQIRENRMD
KRYFACGHGE WQSDWGRRRA VKAPLFKYST AEGERRVRVQ DDGLPSHTVF NLLERWPDYA
LVEAELKTGR THQIRVHLAH LGLPIAGDAK YGDFALNKAL ARANAQPSLK RMFLHAHRLK
LAHPLTGEPL QFDAPLPDEC RRFLDQLSAL RDNA
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