Gene Bamb_0891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0891 
Symbol 
ID4308821 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp978824 
End bp980119 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content66% 
IMG OID638148693 
Productgeneral substrate transporter 
Protein accessionYP_772784 
Protein GI115350945 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00883] metabolite-proton symporter 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCACAG CAACACAAGC CATCGCGCAG GAATCGAAAG TCCGCACCGT GTTCCGGGTC 
GTCAGCGGCA ACTTCCTGGA AATGTACGAC TTCATGGTCT ATGGGTATTA CGCGTCCGCG
ATCGCGAAAA CCTACTTTCC GAGCGGCAAC GCGTTCGCGT CGCTGATGCT GTCGCTGTCG
GTGTTCGGCG CGGGCTTCCT GATGCGCCCG GTCGGCGCGA TCGTGCTCGG CGCGTACATC
GACCATCACG GCCGCCGCAA GGGGCTGATC CTGACGCTCG GGCTGATGGC GCTCGGCACG
CTGACGGTGG CCGGGGTCCC CGGCTACGCG ACGATCGGCG TGCTCGCGCC GGCGCTCGTG
CTGCTCGGCC GGTTGCTGCA GGGCTTTTCC GCGGGCGTCG AGCTGGGCGG CGTGTCGGTC
TACCTGTCGG AGATCGCGAC GAAGGGCCAC AAGGGGTTCT ATACGTCGTG GCAATCGGGC
AGCCAGCAGG TGGCCGTCGT GTTCGCCGCG TTTGTCGGCG TGCTGCTGAA CCGCGTGCTG
CCGGCCGAGG ACATGAGCGC GTGGGGCTGG CGCATTCCGT TCCTGATCGG CTGCCTGATC
GTACCGTTCC TGTTCCTGAT CCGTCGTTCG CTGAAGGAAA CCGACGAGTT CCTCGCGAAG
CGTCATCGTC CGACGATGGG CGAGATCATG CGTTCGATGC TCGAGAACTG GGGTGTCGTG
ATCGCCGGCA TGGGGATGGT GATCATGACG ACGGTGTCGT TCTACATGAT CACCGCATAC
ACGCCGACGT TCGGCAAGGA AGTGCTGCAC CTGTCGTCGC TCGACGCACT CGTCGTGACC
GTCTGCGTCG GCCTGTCCAA CCTCGTGTGG CTGCCGCTGT CCGGCGCGCT GTCGGATCGC
ATCGGCCGCC GGCCGGTGCT GATCGCGTTC ACGGTGCTCA CGCTGCTGTC GGCCTATCCG
GCCGTGCTGT GGCTCGTGGC CGAACCGTCG TTCCTGCGGC TGCTGGCGGT CGAGCTGTGG
CTGTCGTTCC TGTACGGTTC CTACAACGGC GCGATGGTCG TCGCGCTGAC CGAAGTGATG
CCGGTCGACG TGCGCACCGC CGGCTTCTCG CTCGCATACA GCCTGGCGAC GACGATCGGC
GGCTTCACGC CCGCGATCTC GACGTTGCTG ATCCACCAGA CGGGCAACAA GGCCGCACCG
GGGCTGTGGC TGAGCGTCGC GGCGCTTTGC GGGCTGATCG CGACGCTCGT GCTGTATCGC
ACGCGCGAGG CGCGCAACCA GTACAAGGCG GCCTGA
 
Protein sequence
MSTATQAIAQ ESKVRTVFRV VSGNFLEMYD FMVYGYYASA IAKTYFPSGN AFASLMLSLS 
VFGAGFLMRP VGAIVLGAYI DHHGRRKGLI LTLGLMALGT LTVAGVPGYA TIGVLAPALV
LLGRLLQGFS AGVELGGVSV YLSEIATKGH KGFYTSWQSG SQQVAVVFAA FVGVLLNRVL
PAEDMSAWGW RIPFLIGCLI VPFLFLIRRS LKETDEFLAK RHRPTMGEIM RSMLENWGVV
IAGMGMVIMT TVSFYMITAY TPTFGKEVLH LSSLDALVVT VCVGLSNLVW LPLSGALSDR
IGRRPVLIAF TVLTLLSAYP AVLWLVAEPS FLRLLAVELW LSFLYGSYNG AMVVALTEVM
PVDVRTAGFS LAYSLATTIG GFTPAISTLL IHQTGNKAAP GLWLSVAALC GLIATLVLYR
TREARNQYKA A