Gene Bamb_0861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0861 
Symbol 
ID4308528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp944925 
End bp947291 
Gene Length2367 bp 
Protein Length788 aa 
Translation table11 
GC content65% 
IMG OID638148659 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_772754 
Protein GI115350915 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.218724 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACCA CCCCATCGTC CGCCTCCGCG GATTCGACCA CCGAAGCCAC GGCCCGGTCG 
CCTGCGCGCC AGTACATCGA CGCGGTCCTC GAACAGTCCT TCCGGCATCT GTTCGGGCCG
ACCGCCACGC CGGAGCAGCC GCGCAAGCAC GGCGTCGTTT CGATCGCGAA ACTGACGGCC
GCGCTTGCCG AGTATCTCCC TCCGGACGAA ATCAAAGAGG TCAAGGCGGC GTTCCACTTC
AGCGACGAAG CCCACCTCGG TCAATATCGC CAGAGCGGCG AACCCTACAT CACCCATCCT
GTCGCCGTCG CGGAAATCTG CGCCGGCTGG AAGCTCGACG CGCAAGCCGT GATGGCCGCG
CTGCTGCACG ACGTGATGGA AGACCAGGGC GTGACCAAGA GCGAGCTGGC CGAACGTTTC
GGCCCGAAGG TCGCCGAACT GGTCGACGGC CTGTCGAAGC TCGACAAGAT GGAGTTCCGC
AGCCGCGAGG AAGCGCAGGC GGAAAACTTC CGCAAGATGC TGCTCGCGAT GGCACGCGAC
GTGCGCGTCA TCCTCGTCAA GCTCGCCGAC CGTCTGCACA ACATGCGCAC GCTCGGCGCG
GTGCCGATGG AAAAGCGCCG CCGCGTCGCC CGCGAGACGC TCGACATCTA TGCGCCGATC
GCGCACCGCC TCGGGTTGAA CAACACGTAT CGCGAGCTGC AGGACATGAG CTTCGCGAAT
TTCAACCCGC ATCGCTACGC GACGCTCGAG AAGGCCGTGA AGGCCGCGCG CGGCAACCGC
CGCGAAGTGA TCAGCAAGAT CCTCGAGTCC GCGCAGCGCG CGATGACCGA CGCGAAGATC
GACGCCGAGA TCACCGGCCG CGAAAAGACG ATCTACAGCA TCTACCGCAA GATGCGCGAC
AAGCAGCTGT CGTTCTCGCA GGTGCTCGAC GTGTACGGCT TTCGCGTCGT CGTCGATAGC
CCGCTCGACT GCTACACGTG CATCGGCGCG CTGCACGCGC TGTACAAGCC CGTGCCCGGC
AAGTTCAAGG ACTACATCGC GATCCCGAAG ATCAACGGCT ATCAGTCGCT GCACACGACG
CTCGTCGGCC CGTTCGGCGC GCCGATCGAG TTCCAGGTGC GCACGCGCAA GATGCACGAG
ATCGCCGAGG CTGGCGTGGC CGCGCACTGG CTGTACAAGA ACGGTGGCGC CGATCTGAAC
GACGTGCAGA AGCGCGCGCA CCAGTGGCTG AAGTCGCTGC TCGACATTCA GAGCGAAGCC
GGTGATTCGA GCGAATTCCT CGAGCACGTG AAGATCGACC TGTTCCCGGA TGCGGTCTAC
GTGTTCACGC CGAAGTCGAA GATCATGGCG CTGCCGCGCG GCGCGACGGC GCTCGATTTC
GCGTATTCGA TCCACAGCGA TCTCGGCAAC CAGTGCGTGG CCGTGAAGAT CAACAACGAG
CTGCTGCCGC TGCGTACCGA GCTGAAGAGC GGCGACATCG TCGAGGTGAT CACCGCGCCG
TATTCGAAGC CGAACCCCGC GTGGCTCGGT TTCGTGCGCA CCGGCAAGGC GCGCTCGGCG
ATTCGTCACT ATCTGAAGAC GATGCGCCTG AACGAGTCGG TGCAGCTCGG CGAGCGGCTC
GTCGATCAAA GCCTGAAGGG TTACGGGCTT GCGCTGGCCG ACGTGGCGCC GGAAGTGTGG
GAGAAGCTCG TGCAGTGGAC GGGCAACAAG AGCCGCCAGG AAATCTTCGC GGACATCGGC
CTCGGCCGCC GCGTCGCCGC GGTGATGGCC AAGCGCATCG AGGTGCTGAC GAGCGGCCGC
GATGCGGACG ACGATCTGCC GAAGTCCGAG CGGCATCCCG CGCACAATGC GCCGCCGGTC
GTCATTACCG GCACCGAAGG GATGTCCGTG CAGCTGTCGG CATGCTGCCG GCCGATCCCG
GGCGATGCGA TCATGGGCTA TATCGGCATC GGCCTCGGGA TGGCGATTCA TACGACCGAT
TGCCGTGTCG CGCAGCGCAT CCATCGCCGC GATCCGGGCC GCTGGATCGA CGTCGAGTGG
GCACCGCAGC CGGGCCGCCT GTTCGACGTG GCAGTGAAGG CGCTCGTGAA GAACACGAAG
GGCATCTTCG CGCGCGTGGC GGCGGACATC ACGTCGGCCG ACGCGAACAT CGTCCATATC
GCCATGGACG AGGATCTGAC GCACGAATCG ACGGTGCTGC GCTTCGTGAT CCAGGTCAGC
GATCGCGTGC ACCTGGCGAA CGTGATGCGG CGCGTGCGGA CCAATCCGGA CGTGATGCGG
ATCATGCGCG AGCGCTCGAC CGACGACAGC GTGCATGCGC GTCACGACGG CGGCATGCGC
ATCGAGCGCG AACGGCAGGA TTACTGA
 
Protein sequence
MSTTPSSASA DSTTEATARS PARQYIDAVL EQSFRHLFGP TATPEQPRKH GVVSIAKLTA 
ALAEYLPPDE IKEVKAAFHF SDEAHLGQYR QSGEPYITHP VAVAEICAGW KLDAQAVMAA
LLHDVMEDQG VTKSELAERF GPKVAELVDG LSKLDKMEFR SREEAQAENF RKMLLAMARD
VRVILVKLAD RLHNMRTLGA VPMEKRRRVA RETLDIYAPI AHRLGLNNTY RELQDMSFAN
FNPHRYATLE KAVKAARGNR REVISKILES AQRAMTDAKI DAEITGREKT IYSIYRKMRD
KQLSFSQVLD VYGFRVVVDS PLDCYTCIGA LHALYKPVPG KFKDYIAIPK INGYQSLHTT
LVGPFGAPIE FQVRTRKMHE IAEAGVAAHW LYKNGGADLN DVQKRAHQWL KSLLDIQSEA
GDSSEFLEHV KIDLFPDAVY VFTPKSKIMA LPRGATALDF AYSIHSDLGN QCVAVKINNE
LLPLRTELKS GDIVEVITAP YSKPNPAWLG FVRTGKARSA IRHYLKTMRL NESVQLGERL
VDQSLKGYGL ALADVAPEVW EKLVQWTGNK SRQEIFADIG LGRRVAAVMA KRIEVLTSGR
DADDDLPKSE RHPAHNAPPV VITGTEGMSV QLSACCRPIP GDAIMGYIGI GLGMAIHTTD
CRVAQRIHRR DPGRWIDVEW APQPGRLFDV AVKALVKNTK GIFARVAADI TSADANIVHI
AMDEDLTHES TVLRFVIQVS DRVHLANVMR RVRTNPDVMR IMRERSTDDS VHARHDGGMR
IERERQDY