| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0855 |
|---|
| Symbol | |
|---|
| ID | 4308522 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 940125 |
|---|
| End bp | 941339 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638148653 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_772748 |
|---|
| Protein GI | 115350909 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.286896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG CGGCGGAAAC CGGCGCGCGC GTCGTCGCGA CGTTCACGTC GCCCGGGCAG
GTGCGGCTCA CGTCGCTGCC GCCGCTCGCG CTGTACGTGC ATTTTCCGTG GTGCGTGCGC
AAGTGCCCGT ACTGCGATTT CAACTCGCAC GAGTGGAAAG GCGAGCGCTT TCCGGAAACC
GAATACCTCG ACGCGCTGCG TGCCGATCTC GAGCAGGCGC TGCCGCTCGT CTGGGGCCGG
CAGGTGCATA CGGTGTTCAT CGGCGGCGGC ACGCCGAGCC TGCTGTCCGC GGGCGGGCTC
GACCGGCTGC TGTCCGACGT GCGCGCGCTG CTGCCGCTCG ATGCGGACGC CGAGATCACG
CTCGAGGCGA ACCCGGGCAC GTTCGAGGCC GCGAAGTTCG CGCAGTTTCG CGCGAGCGGC
GTGAACCGCC TGTCGGTCGG CATCCAGAGC TTCAACGAAG GCCATCTGAA AGCGCTCGGC
CGCATTCACG ACACCGCGCA GGCGCGCGCG GCCGTCGAGA TCGCCGCGAA GACGTTCGAC
AACTTCAACC TCGACCTGAT GTTCGCGCTG CCGAACCAGA CGCTCGACGA ATGCCGGACC
GACATCGAGA CCGCGCTGTC GTTCGCGCCG CCGCATCTGT CGCTGTATCA CCTGACGCTC
GAGCCGAACA CGATGTTCGC GAAGTTTCCG CCCGCGGTGC CCGACGACGA CGCATCGGCC
GACATGCAGG AATGGATTCA CGAACGCACG GCCGAGGCCG GTTACGGACG CTACGAAGTG
TCCGCGTACG CGAAGCCGAA TCATCAGTGC AAGCACAACC TGAACTACTG GCGCTTCGGC
GACTATCTCG GGATCGGCGC GGGCGCGCAC ACGAAGCTGT CGTTCCCGAA CCGGATCCTG
CGGCAGGCGC GCTACAAGCA TCCGGCGACC TTCATCGAAC AGGCGATGGC CGGCACGCCG
GTGCAGGAAG AACGTGAAGT CGGCCCGCGC GACCTGCCGT TCGAGTTCAT GCTGAACACG
CTGCGGCTCG TCGAGGGTTT CCCCGTGCAC AGCTTCGTCG AACGCACCGG CCTGCCGATC
AGCACCATCG AGCCGGCACT CAAGGAAGCG GAGCGGCGCG GGCTGATCAC GCGCGATTTC
GCGCAGATCG CGCCGACGCC GCTCGGCCAG CGCTTCCTCA ACGACCTGCA GGAATTGTTC
CTGCGCGACG ACTGA
|
|---|
| Protein sequence | MSQAAETGAR VVATFTSPGQ VRLTSLPPLA LYVHFPWCVR KCPYCDFNSH EWKGERFPET
EYLDALRADL EQALPLVWGR QVHTVFIGGG TPSLLSAGGL DRLLSDVRAL LPLDADAEIT
LEANPGTFEA AKFAQFRASG VNRLSVGIQS FNEGHLKALG RIHDTAQARA AVEIAAKTFD
NFNLDLMFAL PNQTLDECRT DIETALSFAP PHLSLYHLTL EPNTMFAKFP PAVPDDDASA
DMQEWIHERT AEAGYGRYEV SAYAKPNHQC KHNLNYWRFG DYLGIGAGAH TKLSFPNRIL
RQARYKHPAT FIEQAMAGTP VQEEREVGPR DLPFEFMLNT LRLVEGFPVH SFVERTGLPI
STIEPALKEA ERRGLITRDF AQIAPTPLGQ RFLNDLQELF LRDD
|
|---|
| |