Gene Bamb_0765 details

Gene Information

• Locus tag: Bamb_0765
• ID: 4310963
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia ambifaria AMMD
• Kingdom: Bacteria
• Replicon accession: NC_008390
• Strand: +
• Start bp: 850042
• End bp: 851934
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 638148560
• Product: polysaccharide biosynthesis protein CapD
• Protein accession: YP_772658
• Protein GI: 115350819
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.932307
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCCGAT CCAAAGCATC GTGGCTTTCA CTGAGTGCTT TCCTGTTCGA CCTGACAGCG 
GTTGTCGCGT CGTGGTTGTT TGCTTACCTC GTTCGTTTCA ACGGCAGTAT TCCGGCTGAT 
TTTCTCGGCG GCGCACTGCA GGCACTCGTC TGGGCGTTGC CGGTCTACGC GCTGATGTTC 
CATCTGTTCG GCCTGTACCG CGGCCTGTGG GTGTTCGCGA GCCTGCCGGA CCTGATGCGC 
ATTTCGAAGG CGGTCGGAGG CGGCGGTGTG ATCGTGATGA TCGGTGCGGT GATGTTCCAG 
CCGTCCCCGA TCATTCCGCG CTCGGTGCTG ATCGTGTCGC CGCTGATGTT GTTCCTCGCG 
ATGGGCGGCG CTCGCGCGCT TTACCGCGCG ACAAAGGAGT TCTACCTGTA TGGCGGGCTG 
GTCGGGCAGG GCAAGCCGGT GCTGGTGCTC GGGGCCGGCA CGGCAGGCGC GAGCCTCGCG 
CGTGAGCTGT CGCGTTCGGG TGAGTGGCGT CTGGTTGGCC TGCTCGACGA CGATGTCACA 
AAGCAAGGAC GCGAGATCTA TGGCTACAAG GTGCTCGGTT CGTTCAACGA CCTGAAGCAC 
TGGACCGACG CGATGAAGAT CGAATACGCG ATCATCGCGA TTCCGTCGGC GTCGGTCGAA 
ACGCAGCGGC GCGTCGCGAC GCTGTGCGTG CGGGCGGGCG TGAAGGCGAT GGTACTGCCG 
TCGCTGACCG CGTTGATGCC GGGGCAGGGG TTCCTGTCGC AAGTGCGCAA TATCGACCTC 
GAGGATCTGC TTGGCCGCGA CGCGGTGACG ATCGACACGC CGCACGTCGA GGCGTTGCTG 
CGCGGTCGCG TCGTGATGGT GACGGGCGCT GGCGGTTCAA TCGGTTCGGA GCTGTGCCGG 
CAGATCCTTC GTTTCGCGCC GGCGCAGCTC GTTGCGTTCG ACCTGTCCGA ATACGCGATG 
TACCGGCTTG CCGAAGAGTT GCGCGAACGC TTTCCGGATC AGCCGGTGGT GCCGATCATT 
GGCGATGCCA AGGATTCGCT GCTGCTCGAT CAGGTGATGT CGCGTCATGC GCCGCACATC 
GTGTTCCATG CGGCCGCGTA CAAACACGTG CCGCTGATGG AGGAACACAA CGCGTGGCAG 
GCGCTACGCA ACAATGTACT CGGCACGTAC CGCGTTGCAT GCGCCGCGAT CCGCCACGAC 
GTGCGCCATT TCGTGCTCAT CTCTACCGAC AAGGCCGTCA ACCCGACCAA CGTGATGGGC 
GCGAGCAAGC GTTTGGCTGA GATGGTCTGC CAGGCGCTGC AGCAGACGAG CGGCGGTACG 
CAGTTCGAGA CCGTGCGCTT CGGCAACGTG CTCGGCAGCG CCGGTAGCGT GATTCCGAAG 
TTCCAGCAGC AGATCGCCAA GGGTGGCCCG GTGACGGTCA CGCACCCGGA AATCACGCGG 
TTCTTCATGA CGATTCCGGA AGCGTCGCAG CTCGTGCTGC AGGCGTCGAG CATGGGGCAT 
GGGGGCGAAA TCTTTATTCT CGAGATGGGG CAGCCGGTCA GGATCGTTGA TCTCGCTCGC 
GATCTGATCC GCCTGTACGG CTTCTCGGAA GGGCAGATCC GGATCGACTT TACGGGGCTG 
AGGCCCGGCG AGAAGCTCTA CGAGGAACTC CTCGCGGACG ACGAGACGAC CACGCGCACA 
CCGCATCCGA AGCTGCGGAT CGCACGCGCG CGCGAAGTGC CGGACCACCT CCTTGACGAA 
CTGCTGCCGT GGCTGATGCA GCGTCGTGTA TTGAGCGACG ACGAAGTGCG TCGGGATCTG 
CGGCGCTGGG TGCCCGAATA CCAGACGGCT GCGAGTCCCG CCCTTCAAAC CGTACCCACG 
TTGTTCCCCT CGAAGTCGGC GGCGCGAGAT TAG 

 

Protein sequence

MFRSKASWLS LSAFLFDLTA VVASWLFAYL VRFNGSIPAD FLGGALQALV WALPVYALMF 
HLFGLYRGLW VFASLPDLMR ISKAVGGGGV IVMIGAVMFQ PSPIIPRSVL IVSPLMLFLA 
MGGARALYRA TKEFYLYGGL VGQGKPVLVL GAGTAGASLA RELSRSGEWR LVGLLDDDVT 
KQGREIYGYK VLGSFNDLKH WTDAMKIEYA IIAIPSASVE TQRRVATLCV RAGVKAMVLP 
SLTALMPGQG FLSQVRNIDL EDLLGRDAVT IDTPHVEALL RGRVVMVTGA GGSIGSELCR 
QILRFAPAQL VAFDLSEYAM YRLAEELRER FPDQPVVPII GDAKDSLLLD QVMSRHAPHI 
VFHAAAYKHV PLMEEHNAWQ ALRNNVLGTY RVACAAIRHD VRHFVLISTD KAVNPTNVMG 
ASKRLAEMVC QALQQTSGGT QFETVRFGNV LGSAGSVIPK FQQQIAKGGP VTVTHPEITR 
FFMTIPEASQ LVLQASSMGH GGEIFILEMG QPVRIVDLAR DLIRLYGFSE GQIRIDFTGL 
RPGEKLYEEL LADDETTTRT PHPKLRIARA REVPDHLLDE LLPWLMQRRV LSDDEVRRDL 
RRWVPEYQTA ASPALQTVPT LFPSKSAARD