| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0508 |
|---|
| Symbol | |
|---|
| ID | 4311214 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 572644 |
|---|
| End bp | 573096 |
|---|
| Gene Length | 453 bp |
|---|
| Protein Length | 150 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638148302 |
|---|
| Product | 3-dehydroquinate dehydratase |
|---|
| Protein accession | YP_772401 |
|---|
| Protein GI | 115350562 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0757] 3-dehydroquinate dehydratase II |
|---|
| TIGRFAM ID | [TIGR01088] 3-dehydroquinate dehydratase, type II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACGAT TGCTGGTGCT GCACGGCCCC AACCTGAACC TTCTCGGCAC CCGGGAACCG
GAGGTGTACG GCCGCGTCAC GCTCGCGCAG ATCGATCAGG CGCTTGCCGC GCGGGCGCAG
GAAGCCGGCG CCGAGCTGTC GTCGTTCCAG AGCAACCATG AAGGCGCGCT CGTCGACCGC
ATCCAGGCCG CGCGGGAGGA ACAGACCGAT TTCATCCTGA TCAATCCCGC CGCGTATACG
CACACCAGCG TCGCGATCCG GGACGCGATC GCCGGCGTAG GCATCCCGTT CGTCGAGATT
CACCTGTCGA ACGTGCACCG CCGCGAAGCG TTCAGGCATC ACTCCTACTT TTCCGACCAG
GCCGAAGGCG TCATCTGCGG GCTCGGCTGG AAAGGTTATC TGTACGCGCT CGAGTACGCG
CTGGACAAGC TGCAAGGCGC GTCGCGCGGC TGA
|
|---|
| Protein sequence | MTRLLVLHGP NLNLLGTREP EVYGRVTLAQ IDQALAARAQ EAGAELSSFQ SNHEGALVDR
IQAAREEQTD FILINPAAYT HTSVAIRDAI AGVGIPFVEI HLSNVHRREA FRHHSYFSDQ
AEGVICGLGW KGYLYALEYA LDKLQGASRG
|
|---|
| |