Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0465 |
Symbol | ddl |
ID | 4311154 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | + |
Start bp | 527936 |
End bp | 528877 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638148258 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_772358 |
Protein GI | 115350519 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0881757 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGGAA TCGATCCGAA ACGTTTCGGC AAGGTGGCAG TGTTGTTCGG CGGCGAATCC GCCGAGCGCG AGGTGTCGCT CACCTCGGGC CGCCTCGTGC TGCAGGGCCT GCGCGACGCG GGCATCGACG CGCATCCGTT CGACCCGGCC GAGCGGCCGC TGTCGGCACT GAAGGATGAA GGCTTCGTGC GCGCGTTCAA CGCGCTGCAC GGCGGCTATG GCGAGAACGG CCAGATCCAG GGCGCGCTCG ATTTCTACGG GATCCGCTAC ACGGGCAGCG GCGTGCTCGG CTCGGCGCTC GGCCTCGACA AGTTCCGCAC GAAGCTCGTG TGGCAGCAGA CGGGCGTGCC GACGCCGCCG TTCGAGACGG TGATGCGCGG CGACGACTAC GCGGCGCGCG CGACGGACAT CGTCGCGAAG CTCGGCCTGC CGCTGTTCGT GAAGCCGGCG AGCGAAGGCT CGAGCGTCGC GGTGCTGAAG GTCAAGACGG CCGACGCGTT GCCCGCCGCA CTGTCGGAAG CCGCGACGCA CGACAAGATC GTGATCGTCG AGAAGAGCAT CGAAGGCGGC GGCGAATACA CCGCGTGCAT CGCCGGCGAT CTCGATCTCC CGCTGATCAA GATCGTGCCG GCGGGCGAGT TCTACGACTA CCACGCGAAG TATGTCGCCA ACGACACGCA GTACCTGATT CCGTGCGGGC TGCCGGCGGA GCAGGAAACC GAACTGAAGC GCATCGCGCG CCGCGCGTTC GATGTGCTCG GCTGCACCGA CTGGGGCCGC GCGGATTTCA TGCTCGACGC CGCCGGCAAC GCGTATTTCC TGGAAGTGAA CACGGCCCCC GGGATGACCG ACCATTCGCT GCCGCCGAAG GCCGCGCGCT CGATCGGCAT CAGCTATTCG GAGCTGGTCG TGAAGGTGCT GGCGCTTACG CTCAACGACT GA
|
Protein sequence | MSGIDPKRFG KVAVLFGGES AEREVSLTSG RLVLQGLRDA GIDAHPFDPA ERPLSALKDE GFVRAFNALH GGYGENGQIQ GALDFYGIRY TGSGVLGSAL GLDKFRTKLV WQQTGVPTPP FETVMRGDDY AARATDIVAK LGLPLFVKPA SEGSSVAVLK VKTADALPAA LSEAATHDKI VIVEKSIEGG GEYTACIAGD LDLPLIKIVP AGEFYDYHAK YVANDTQYLI PCGLPAEQET ELKRIARRAF DVLGCTDWGR ADFMLDAAGN AYFLEVNTAP GMTDHSLPPK AARSIGISYS ELVVKVLALT LND
|
| |