Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bamb_0452 |
Symbol | |
ID | 4311656 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria AMMD |
Kingdom | Bacteria |
Replicon accession | NC_008390 |
Strand | - |
Start bp | 512350 |
End bp | 513507 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638148245 |
Product | porin |
Protein accession | YP_772345 |
Protein GI | 115350506 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.14543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGT CGCTTCTCGC GCTCGTCGCG CTGGGCGCGT TCGCTGGCGC AGCTCATGCG CAAAGCAGCG TGACGCTTTA CGGCATCATC GATGAAGGCT TCATCTTCAA CAACAATGCG AAGGGCGGCC ATCTGTACGG TCTGTCGAGC GGCGTGATGC AAGGCAGCCG CTTCGGCCTG CGCGGCACCG AAGATCTGGG CGGCGGCCTG AAGGCGGTCT TCGTGCTCGA GAACGGTTTT GACGTCAACT CCGGCAGGCT CGGCCAGGGC GGCCTGATGT TCGGCCGCCA GGCTTACGTC GGCCTGTCGA GCCAGTTCGG TACGGTCACG CTGGGTCGTC AGTACGACTC CGTCGTCGAC TTCGTCGGCC CGCTCGAGGC AGGCGACCAG TGGGGCGGCT ACATCGCTGC TCACCCGGGC GACCTCGACA ACTTCAACAA CGCATACCGT GTGAACAACG CGGTCAAGTA CACGAGCCCG ACCTACGGCG GCTTCTCGTT CGGCGGCATG TACAGCTTCG GCGGTCAGGC CGGCCAGTTC TCGCGGAACC AGGTCTGGTC GCTCGGCGCC GGTTACAACA ACGGCCCGCT GGTGTTGGGT GTCGGCTACT TGAACGCACG CACGCCGGCG AACTTCGGCG GCATGTTCAA CACCGGCGCG TCGGCTGCCA CGACGGCCGT GTCGTCGCCG GTGTACGGCG CGTACGCGAA CAGCGCGAAC ACGTACCAGG TCATCGGTGC GGGCGGCGCA TATACGTTCG GCGCGGCGAC GATCGGCGCG ACGTACTCGA ACACGAAGTT CAAGGGCTTC TCGGTGGGTC CGTTCGTGAA CCAGACCGCG ACGTTCAACA ACGGCGAAAT CAACTTCAAG TATCAGTTGA CCCCGGCGCT GATCGTCGGC GCCGCGTACG ACTACACGCA AGGCAGCAAG ATCGACGGCA ACTCGGCAGC CAAGTACCAC CAGGGCTCGC TGGGCGTCGA CTACTTCCTG TCGAAGCGCA CGGACGTCTA CGTGATCGGC GTGTATCAGC ATGCATCGGG CAACGCGCTC GACGCAGCAG GCAACGTCGT TCAGGCACAT GCTTCGATCA ACGGTCTCGA CCCGTCGACG ACCAGCAACC AGGTCGCAGC TCGCGTCGGC ATCCGTCACA AGTTCTAA
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Protein sequence | MKKSLLALVA LGAFAGAAHA QSSVTLYGII DEGFIFNNNA KGGHLYGLSS GVMQGSRFGL RGTEDLGGGL KAVFVLENGF DVNSGRLGQG GLMFGRQAYV GLSSQFGTVT LGRQYDSVVD FVGPLEAGDQ WGGYIAAHPG DLDNFNNAYR VNNAVKYTSP TYGGFSFGGM YSFGGQAGQF SRNQVWSLGA GYNNGPLVLG VGYLNARTPA NFGGMFNTGA SAATTAVSSP VYGAYANSAN TYQVIGAGGA YTFGAATIGA TYSNTKFKGF SVGPFVNQTA TFNNGEINFK YQLTPALIVG AAYDYTQGSK IDGNSAAKYH QGSLGVDYFL SKRTDVYVIG VYQHASGNAL DAAGNVVQAH ASINGLDPST TSNQVAARVG IRHKF
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