Gene Bamb_0153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0153 
Symbol 
ID4310895 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp184534 
End bp186798 
Gene Length2265 bp 
Protein Length754 aa 
Translation table11 
GC content70% 
IMG OID638147932 
ProductTPR repeat-containing protein 
Protein accessionYP_772048 
Protein GI115350209 
COG category[N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3063] Tfp pilus assembly protein PilF
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.372833 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGGCG CTGTCGTGGA ACGGTTGAAC GCGGCGTTCG TGCACCATCA GGCCGGGCGC 
TTCGACGACG CTCGCATGCT GTACGAGGCG ATCCGGCGCG ACGAGCCGGA TCAGCCGGAT
GCGACGCACT TCCTCGGGCT GCTCGCGTGC CAGCTCGGCC AGTTTCCGGC CGGCCTCGCG
CTGATGGAGC GCGCGATCGC GCTGCGCGCC GATCCCGTCT ACCTGAACAA CTTCGGCAAC
ATGCTGCGCG CGCACGGCCG GCTCGGCGAT GCGATCGGCG CGTACCGGCG TGCGATCGCG
CTCGCGCCCG ACTATGCGGA AGCGCACAGC AACCTCGGCA ACGCGTTGCG CGACGCGGGC
GACGCGGACG CCGCGATGCT GAGCTGCGCG CAGGCGCTCG CGCTGCGCCC CGATTACGCG
CCGGCGTTCA ACAACCTCGG TAACGCACTG CAGGACAAGG GCGAACTGGA CGCCGCGGCG
CGCGCGTACG AGAAGGCGAT CGCACTCGAT CCCGGCTACG CGCAGGCCCG CTTCAACCAG
GGCAACGTAT TGCGTGCGCA GCGCCGGCCC GACGAGGCGA TCGCGTGCTA CCGCGAAGCG
ATCGCGCTGC AACCGCACCT GCATGCCGCG CATCACGCGC TCGGCGTGCT GCTGTTCGAG
CGCGATGATC GCGAGGCCGC GATCGCGAGC CTCACCCGCG CGGCGGAATC GGGTGAAGCG
GACTGCCTGT TCCACCTCGC GGCCGCGCTC GAGCGTGCAG GCGATCTCGA CGGCACGGTG
GCGAGCCTGC GGCGTGCGCT TGCCGCGGCG CCCGATCGTG CGGACCTGCA TCACCACCTC
GCGCAGACGT TGGTCCGGCA GGGCAAGCGG CGTGAAGCGC TCGACAGTTG CCGGATCGCG
CTGTCGCTGC CGAACCCGAC CGCGCAGATG CACGCAGTGA TGGGCGACAT CCTGTGCGCG
ATGTGGCACC TCGATGCGGG GCTCGCGAGC TACGATCGTG CGCTCGAAAT CGATCCCGCG
TTCCGCAACG CACACTCGGG CCGCATGTTC CACGCGGCCG GCACCGACCG GCTGTCGCCC
ATGCAACTCC TCGAACGCGC GCGCGAATTC GGCGCGCGGA TGGCCGCGCA GGCGTCGCCG
CGTACGCATG TGCCGCGGCC GGCCGCCGGG CGCGTGTTGC GTGTCGGGTT CGTGTCCGGA
GACCTGAAGT CCCATCCGGT CGCGGTGTTC CTGCTGAGCG TCGTCGCGGC GCTCGATCCG
TCGCGCATCG CGGCGGTGGC CTACGCGACG CAGTCGGTGG AGGACGACAC GACTGCGGCG
CTCAAGCGCC ATTTCGCGCT GTGGCGCGAC ATCACCGCGC TCGATGATCG CGCGGCCGCC
GACCTGATCG TGAATGACCA CATCGACGTG CTGGTCGATC TGAGCGGCCA TACCGCGTCG
AACCGGCTGC CGTTGTTCGC ATGGAAGCCG GCACCGGTGC AGGCGACCTG GCTCGGCTAT
TTCGCGACGA CCGGCATCGC CGCGATCGAC TACGTGATCG GCGATCGCCA CGTGCTCCCC
GACGACGAAG CGCATCACTT CGCCGAGCGG CCGTGGCGGC TGCCCGACAG TTACCTGTGC
TTCACGCCGC CCGCACAGCC GCTCGACGTC GGGCCGCTGC CGGCCGAGCG CGAAGGTGTC
GTCACGTTCG GATGCCTGAA CAATGCGAAC AAGATCGGCG ACGCCGTCGT CGCGCTGTGG
TCGCGCGTGC TGCATGCGGT ACCCGGTTCG CGCCTGTTGC TGAAGTCGGC GCAGCTCGAC
GAAGCCGCGC TGCGCACGAG CCTCGCCGCG CGCTTCGCGG CACACGGTAT TCCGGCAGAG
CGCCTGCTGC TGCGCGGCGG ATCGAAGCGG CTCGCGCACA TCGCCACGTA CAACGACATC
GACATCGTGC TCGATCCGTT CCCGTATCCG GGCGGCACGA CGAGCATGGA AGGACTGTGG
ATGGGCGCGC CGTTCATCAC GCGGCGCGGC GACCGCTTCC TGTCGCATAT CGGCGAAAGC
ATCCTGCATA CGCTCGGGAT GCCTGAATGG ATCGCGGACA ACGACGACGA CTATGTCGCG
AAGGCGGCCG CGTTCGCGCA GGATCTGCCG CATGTCGCGG CCGTGCGGGC CGGGCTGCGC
GAGCGGCTGC TGCGCTCGCC GCTGTGCGAT GCTCCGCGCT TCGCCCGCCA TCTCGAAGCG
GCGTTCGCGC AGATGGTCGA CGCGGCGGCG GTGGCCGCGC GCTAG
 
Protein sequence
MTGAVVERLN AAFVHHQAGR FDDARMLYEA IRRDEPDQPD ATHFLGLLAC QLGQFPAGLA 
LMERAIALRA DPVYLNNFGN MLRAHGRLGD AIGAYRRAIA LAPDYAEAHS NLGNALRDAG
DADAAMLSCA QALALRPDYA PAFNNLGNAL QDKGELDAAA RAYEKAIALD PGYAQARFNQ
GNVLRAQRRP DEAIACYREA IALQPHLHAA HHALGVLLFE RDDREAAIAS LTRAAESGEA
DCLFHLAAAL ERAGDLDGTV ASLRRALAAA PDRADLHHHL AQTLVRQGKR REALDSCRIA
LSLPNPTAQM HAVMGDILCA MWHLDAGLAS YDRALEIDPA FRNAHSGRMF HAAGTDRLSP
MQLLERAREF GARMAAQASP RTHVPRPAAG RVLRVGFVSG DLKSHPVAVF LLSVVAALDP
SRIAAVAYAT QSVEDDTTAA LKRHFALWRD ITALDDRAAA DLIVNDHIDV LVDLSGHTAS
NRLPLFAWKP APVQATWLGY FATTGIAAID YVIGDRHVLP DDEAHHFAER PWRLPDSYLC
FTPPAQPLDV GPLPAEREGV VTFGCLNNAN KIGDAVVALW SRVLHAVPGS RLLLKSAQLD
EAALRTSLAA RFAAHGIPAE RLLLRGGSKR LAHIATYNDI DIVLDPFPYP GGTTSMEGLW
MGAPFITRRG DRFLSHIGES ILHTLGMPEW IADNDDDYVA KAAAFAQDLP HVAAVRAGLR
ERLLRSPLCD APRFARHLEA AFAQMVDAAA VAAR