| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0129 |
|---|
| Symbol | |
|---|
| ID | 4309198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria AMMD |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008390 |
|---|
| Strand | - |
|---|
| Start bp | 151019 |
|---|
| End bp | 152407 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 638147907 |
|---|
| Product | L-serine dehydratase 1 |
|---|
| Protein accession | YP_772024 |
|---|
| Protein GI | 115350185 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1760] L-serine deaminase |
|---|
| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTCA GCGTGTTTGA CCTCTTCAAG ATCGGCATCG GCCCGTCCAG TTCGCATACG
GTCGGACCGA TGCGCGCGGC GCTGATGTTC GTCCAGGGCC TCGAGCGCGA CGGGCTGCTC
GACGCGACGG CCAACGTGAA GGTCGAGCTG TACGGGTCGC TGGGCGCGAC CGGCAAGGGC
CACGGCACCG ACCGCGGCGT GATGCTCGGC CTGCTCGGCG ACGCGCCCGA CACCGTCGAT
CCCGACACGA TCGACGCGCG GCTCGACGAC GTCCGCAAGT CGAAGCAGCT CGCGCTGCTC
GGCACGCATC CGGTGCCGTT CGTGCTGAAG GAGCACATCG CGTTCTACCG GCAGGCGCTG
CCCGAGCACC CGAACGGGAT GAAGCTGCGC GCGTCCGACG CGAACGGCGA CGTGCTGGTC
GAGCGCACCT ACCTGTCGGT CGGCGGCGGC TTCGTCGTGA CGGCCGGCGC GCCGAACACG
AAGGTGCTGA GCGCGGCCGA GCAGATGACG CACCCGTTCC GCACCGGCGC CGAGCTGCTC
GCGCTGACCG AGGCGACCGG CAAGTCGATC GCGCGGCTGA TGTGGGAAAA CGAGCGCGCG
TGGCACACCG AGGAAGAGAC GCGCGACGGG CTGCTGAAGA TCTGGGCCGT GATGCAGTCG
TGCGTGTCGC GCGGCTGCGG GATCGGCAAT CCGGACGCCG ACGGCAACCT GCCCGGCCCG
TTCCAGGTGA AGCGCCGCGC GCCGCAGCTG TATCGCACGC TGACCGGCAA CCCGGAACAG
GCGCTGCAGG ATCCGCTGTC GATGATCGAC TGGATCAACC TGTATGCGAT CGCCGTCAAC
GAGGAAAACG CGGCCGGCGG CCGTGTCGTC ACCGCGCCGA CCAACGGCGC GGCCGGCATC
ATTCCGGCGG TGCTGCACTA CTACACGCGC TTCACGCCGG GCGCGAACGA ACAGGGCGTG
ATCGACTTCC TGCTGACGGC CGCAGCGATC GGCATTCTGT ACAAGCTGAA CGCGTCGATT
TCGGGCGCGG AAGTGGGCTG CCAGGGCGAA GTGGGCGTCG CGTGCTCGAT GGCGGCCGGC
GCGCTCGCGG CCGTGCTCGG CGGCACGCCG CGCCAGGTCG AGAACGCGGC CGAGATCGGG
ATGGAGCACA ACCTCGGCCT CACCTGCGAC CCGGTCGGCG GGATGGTGCA GATCCCGTGC
ATCGAGCGCA ACGCGATGGC GTCGGTGAAG GCCGTCAACG CGGCGCGCAT GGCGCTGCGC
GGCGACGGCT CGCACTACGT GTCGCTCGAC TCGGTGATCA AGACGATGCG CGAGACGGGC
GCCGACATGA AGACGAAGTA CAAGGAAACG TCGCGCGGTG GCCTGGCGGT GAATATCGTC
GAGTGTTGA
|
|---|
| Protein sequence | MAVSVFDLFK IGIGPSSSHT VGPMRAALMF VQGLERDGLL DATANVKVEL YGSLGATGKG
HGTDRGVMLG LLGDAPDTVD PDTIDARLDD VRKSKQLALL GTHPVPFVLK EHIAFYRQAL
PEHPNGMKLR ASDANGDVLV ERTYLSVGGG FVVTAGAPNT KVLSAAEQMT HPFRTGAELL
ALTEATGKSI ARLMWENERA WHTEEETRDG LLKIWAVMQS CVSRGCGIGN PDADGNLPGP
FQVKRRAPQL YRTLTGNPEQ ALQDPLSMID WINLYAIAVN EENAAGGRVV TAPTNGAAGI
IPAVLHYYTR FTPGANEQGV IDFLLTAAAI GILYKLNASI SGAEVGCQGE VGVACSMAAG
ALAAVLGGTP RQVENAAEIG MEHNLGLTCD PVGGMVQIPC IERNAMASVK AVNAARMALR
GDGSHYVSLD SVIKTMRETG ADMKTKYKET SRGGLAVNIV EC
|
|---|
| |