| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0128 |
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| Symbol | |
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| ID | 4309197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | - |
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| Start bp | 149151 |
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| End bp | 150854 |
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| Gene Length | 1704 bp |
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| Protein Length | 567 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 638147906 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_772023 |
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| Protein GI | 115350184 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0427824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGCATT CCAAGGATCT CGAGCAGAGC GCCACCACCG GCGCGCGACT GCTCGTCGAT
GCGTTGCTCG CCAATCACGT CGAACGCGCG TTCTGCGTGC CGGGCGAGAG CTTCCTCGCC
GTACTCGATG CGCTCGCGGA TCACACCGCG CGCATCCAGA CGGTCGTCTG CCGCCACGAG
GCGGCCGCCG CGAACATGGC GGAGGCGGTC GGCAAGCTGA CCGGCCGCCC CGGCATCGCG
TTCGTCACGC GCGGGCCAGG CGCGACCCAC GCGTCGATCG GCGTGCACAC CGCGTTCCAG
GATTCGACGC CGATGATCCT GTTCGTCGGC CAGTGCGCGC GCGAGCACCT CGACCGCGAA
GCGTTCCAGG AAATCGACTA CCGGCGGATG TTCGGCCAGA TGGCGAAATG GGTCGCGCAG
ATCGACGACC CGCGCCGCAT TCCCGAATAC CTGAGCCATG CGTTCCACGT CGCGACCGCC
GGTCGCCCGG GCCCCGTCGT GCTCGCGCTG CCGGAGGACG TGCTGTCCGA AGCGTGCGCG
TCGCAGCCGG TCGTGCCGGC CGCGAAACGC GTCGCGGCGT CGCCGTCGGC CGCGCAGCTC
GACGAACTGC GCGAACGGCT CGCGCGCGCG GAACGGCCGT TCGCGATCGT CGGCGGCAGC
GGCTGGACGC CCGACGCATG CGCGAACCTG CGTACCTTCG TCGAGCGCTG GCAACTGCCG
GTCGCATGCG CGTTCCGCTT CCAGGACACC TTCGACAACG CGCACCCGAA CTACGCGGGC
GACGTCGGCC TCGGGATCAA TCCCGCGCTC GGCAAGCGGA TTCGCGACGC CGACCTGCTG
CTGGTGCTCG GCCCGCGCCT CGGCGAAGCG ACGACGGGCG GCTACACGCT GCTCGACATC
CCGAAGACGC GCCAGACGCT GATCCACGTG CACCAGGGCG CGGACGAGCT CGGTCGCGTG
TATGCGGCCG ACCTGCCGAT CGTGTCGGGG ATGCCGGAGA TCGCGGCGCC GCTCGCCGCG
CTCGAGCCGC CGGCGCACCT CGCATGGGCC GGCACGGCCG CCGACGCGCA CCGCGCGTAC
CGCGAATGGC ATGCGCCGCT GCCGATGCCC GGCGACGTCC AGCTCGGCGA CGTGATGGTG
CAGCTGCGCG AGCGCCTGCC GCACGACGCG ATCCTGACCA ACGGCGCCGG CAACTACGCG
ATCTGGCTGC ATCGCCACTT CGCGTACCGG CATTTCCGCT CGCAGCTCGC GCCGACCAGC
GGCGCGATGG GTTACGGGCT GCCCGCCGCG CTCGCCGCCA AGTCGCTGTA TCCGGAGCGG
GCGGTCGTCG CCCTTGCCGG CGACGGCTGC TTCATGATGG CCGGCAACGA ACTCGCGACC
GCGATGCAGT ACGGGCTGAA CATCGTCGCG ATTGTCGTCA ACAACGGGCA TTTCGGCACG
ATCCGCATGC ATCAGGAGCG CAACTATCCG GGGCGCGCGC ACGGCACGGG GCTCACGAAC
CCCGATTTCG CCGCGTATGC GCGCGCGTTC GGCGCACATG GCGAGACGGT CGAGCGCACC
GCCGACTTCG CGCCGGCACT GGAGCGCGCG CTGACCTGCG GGCTGCCGGC GCTGATCGAG
ATCCGCATTC CGCAGGACGC CAGCACGCCG GCCGCGACGC TCGAGCAGAT CCGCGAGCAG
GGCCGCCGGG CGCGCGGCGC ATGA
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| Protein sequence | MSHSKDLEQS ATTGARLLVD ALLANHVERA FCVPGESFLA VLDALADHTA RIQTVVCRHE
AAAANMAEAV GKLTGRPGIA FVTRGPGATH ASIGVHTAFQ DSTPMILFVG QCAREHLDRE
AFQEIDYRRM FGQMAKWVAQ IDDPRRIPEY LSHAFHVATA GRPGPVVLAL PEDVLSEACA
SQPVVPAAKR VAASPSAAQL DELRERLARA ERPFAIVGGS GWTPDACANL RTFVERWQLP
VACAFRFQDT FDNAHPNYAG DVGLGINPAL GKRIRDADLL LVLGPRLGEA TTGGYTLLDI
PKTRQTLIHV HQGADELGRV YAADLPIVSG MPEIAAPLAA LEPPAHLAWA GTAADAHRAY
REWHAPLPMP GDVQLGDVMV QLRERLPHDA ILTNGAGNYA IWLHRHFAYR HFRSQLAPTS
GAMGYGLPAA LAAKSLYPER AVVALAGDGC FMMAGNELAT AMQYGLNIVA IVVNNGHFGT
IRMHQERNYP GRAHGTGLTN PDFAAYARAF GAHGETVERT ADFAPALERA LTCGLPALIE
IRIPQDASTP AATLEQIREQ GRRARGA
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