Gene Bamb_0102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamb_0102 
Symbol 
ID4311230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria AMMD 
KingdomBacteria 
Replicon accessionNC_008390 
Strand
Start bp114210 
End bp116471 
Gene Length2262 bp 
Protein Length753 aa 
Translation table11 
GC content72% 
IMG OID638147880 
Productprimosome assembly protein PriA 
Protein accessionYP_771997 
Protein GI115350158 
COG category[L] Replication, recombination and repair 
COG ID[COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase 
TIGRFAM ID[TIGR00595] primosomal protein N' 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGATA CCTACCTGCG CGTCGCGCTC GACCACCCGC TTGCCACCCT GTTCGACTAC 
CGCTGCGACG TCCAGCCGGC GCCCGAGCCC GGCACGCTCG TCCAGGTGCC GTTCGGCAAG
CGGCAGGTCG TCGGGCTCGT CTGCGAAGTG ACGACTCACA CCGACGTGCC GCCGTCGCGG
TTGCGCGGGA TCGACGCCAT CTGTACCGAA CTGCCGCCGC TGGCGCCCGA CTGGCTCGCG
CTCGTATCGT TCGCGGCCGA CTACTACCAG CGCGGCCGCG GCGAAGTCGC GCTGCCGGCG
TTGCCGCAGG CGTTGCGCGA TGCGCAGCGC TGGGGGCGGC TGCTGGCGCC GGAGGTGCGC
TACCGGCTGA GCGAAGCCGG CCGCGCCGCG CTTCCCGACG CACTGCCCGC GCGCGGGGCC
GCGCTGCGAC GGCTCGCACA GGCGCTCGCC GACACCGATT CGCTGACGTT GCCCGACGTG
CGCGCGTTGC ACCCGAAGGC GGCCGCCACG CTCGACGACT GGGCGGCGCG CGGCTGGGTC
GCGATCGAGG AGATCGGCTG GGCCGATGCG CCTGTGCCCA AAGCTGTGGA TAACCTGTCG
ACAACCAGTG GACGAGCTGT GCCGCCGGCG CTCACCGACC AGCAGGCCGA GGCGCTCGAC
GCGATCCGCG CCGCGCAGGG TTTCGCGCCG TTCCTGCTGC ACGGCGTGAC GGGCAGCGGC
AAGACCGAGG TCTATCTGCA TGCGCTTGCC GCGCTGCTCG ACGCGCGGCC CGACGCGCAG
GCGCTCGTGC TCGTGCCCGA AATCAACCTG ACGCCACAGT TCGAGGCCGC GTTTCGCGCG
CGCTTCGCGG GCACGCTCGC GGACGACGCG ATCGTCACGC TGCACAGCGG GCTCGCCGAG
GGCGAACGTG CGCGCAACTG GCTCGCCGCG CACACGGGCC GCGCGCGGAT CGTGCTCGGC
ACGCGGCTCG CGGTGCTCGC GTCGCTGCCG ACGCTCGCGC TGATCGTCGT CGACGAGGAG
CACGAGCCCG CGTACAAGCA GCAGGAAGGG TTGCGCTATT CGGCGCGCGA TCTCGCGGTG
TGGCGCGCGA AGCATCTCGG CATTCCGGTC GTGCTCGGCT CGGCGACGCC GTCGCTCGAA
AGCTGGTGGC AGGCCGAGCA GGGGCGCTAT ACGCGGCTCA CGCTGTCGCG CCGCGCGGTG
GCCGACGCGA CGCTGCCCAC CGTGCGGCTG ATCGATCTCG AAGAGGAGCG GCGGCGCGGG
CGCGCGTCGC TGGGCGGGCT GTCGGGGCCG CTCGTCGCGG CGCTGAAGGC GCGGCTCGAG
CGCGGCGAAC AGAGCCTCGT GTTCCTGAAC CGGCGCGGTT ACGCGCCGCA GCTCGCGTGC
GACGCGTGCG GCTGGGTCGC CGGTTGCCCG CGCTGCAGCG CCTACGTCGT GCTGCACAAG
CCCGAGCATG CGCTGCGCTG CCATCACTGC GGCTGGGAAG CGCGTATTCC GCGCTCGTGC
CCGGAATGCG GGAACGTCGA CATCGCGCCG CTCGGGCGCG GCACGCAGCG CATCGAGGAG
GCGCTTGCCG AGGCCGTGAC GGGCGCGCGG ATCCTGCGGA TCGACGCGGA CAGCACACGA
CGCAAGGGCA GCGCGCAGGC GTTGTTCTCG GACGTGCACG CCGGTGAAGT CGACATCCTG
GTCGGCACGC AGATGATCGC GAAGGGGCAC GACTTCCAGC GCGTGTCGCT CGTCGGCGTG
CTCAATGCGG ACACCGCGCT GTTCTCGCAC GACTTCCGCG CGAGCGAGCG GCTGTTCGCG
CAGCTGATGC AGGTGAGCGG TCGCGCCGGG CGCGCCGGGC TACCCGGCGA GGTGCTGGTG
CAGACGCGTT ATCCGCGTCA CGCGCTGTAT CACGCGCTCG GCCGGCAGGA TTACGTCGGC
TTCGCGAATT CGACGCTCGG CGAGCGCCGC GACGCGCACC TGCCGCCGTT CGTCTACCAG
GCGCTGCTGC GCGCCGAAGG ACGCACGCTC GACGCGGCGC TCGCGTTCCT GCTGCAGGCC
GCCGCCGCGC TGCCGGGGCT GCCAGGCGCC GATCGGGTGA CCGTATACGA CGCGGTGCCG
ATGACGATCG TGAAGGTCGC GAACGTCCAC CGCGCGCAAC TGCTGCTCGA AAGCGCGTCG
CGGGCGGCGC TGCAGCATGC GCTGCGGGCC TGGCTCCCCG AGCTGCGCGC GCTGAAGGGC
GTCCATCGGT GGAACCTCGA GGTCGATCCG CTCGATATCT GA
 
Protein sequence
MADTYLRVAL DHPLATLFDY RCDVQPAPEP GTLVQVPFGK RQVVGLVCEV TTHTDVPPSR 
LRGIDAICTE LPPLAPDWLA LVSFAADYYQ RGRGEVALPA LPQALRDAQR WGRLLAPEVR
YRLSEAGRAA LPDALPARGA ALRRLAQALA DTDSLTLPDV RALHPKAAAT LDDWAARGWV
AIEEIGWADA PVPKAVDNLS TTSGRAVPPA LTDQQAEALD AIRAAQGFAP FLLHGVTGSG
KTEVYLHALA ALLDARPDAQ ALVLVPEINL TPQFEAAFRA RFAGTLADDA IVTLHSGLAE
GERARNWLAA HTGRARIVLG TRLAVLASLP TLALIVVDEE HEPAYKQQEG LRYSARDLAV
WRAKHLGIPV VLGSATPSLE SWWQAEQGRY TRLTLSRRAV ADATLPTVRL IDLEEERRRG
RASLGGLSGP LVAALKARLE RGEQSLVFLN RRGYAPQLAC DACGWVAGCP RCSAYVVLHK
PEHALRCHHC GWEARIPRSC PECGNVDIAP LGRGTQRIEE ALAEAVTGAR ILRIDADSTR
RKGSAQALFS DVHAGEVDIL VGTQMIAKGH DFQRVSLVGV LNADTALFSH DFRASERLFA
QLMQVSGRAG RAGLPGEVLV QTRYPRHALY HALGRQDYVG FANSTLGERR DAHLPPFVYQ
ALLRAEGRTL DAALAFLLQA AAALPGLPGA DRVTVYDAVP MTIVKVANVH RAQLLLESAS
RAALQHALRA WLPELRALKG VHRWNLEVDP LDI