| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bamb_0040 |
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| Symbol | |
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| ID | 4308708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria AMMD |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008390 |
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| Strand | + |
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| Start bp | 49812 |
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| End bp | 51374 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 638147818 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_771935 |
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| Protein GI | 115350096 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTACG CCCCCCTCCC GCGCGCCTTT CGCCCGCTGA GCGCCGCCGT CGCCGTTGCG
ACGGCCGTGC TGCTCGCCGG CTGCGCCGTC GGGCCCGACT ATCACCGGCC CGACACGTCG
ATCCCCGCCG CCTTCAAGGA AGCGCCGGCC GGCTGGAAGG TCGCGCAGCC GGCCGACCGG
GCCGACCGCG GCCCGTGGTG GAGCGTCTAC AACGATCCGC AGCTCGACGC GCTGATCGGC
AAGCTCAACG CATCGAACCA GACCATCGCG CAATCGGCCG CCGCGTACCG GCAGGCCCGC
GCGCTCGTCG CCGAAGCGCG CGCCGCGTAT TTCCCGACCG TCGGGCTGAC CGCGTCGGGC
TCGCGCGCAC GCTCGGGGCG CACGCCCACG TCGTCGGGCG CGTCGGGCTT CGGCAGCAGT
TCGTCGATCA GCAACAGCTA CAGCGTCGGT CTCGATGCGA GCTGGGAGCC CGACCTGTGG
GGCAAGGTGA GCCGCAGCGT CAGCGCGCAG CGCGCCGGCG AAGCGGCCGC CGCGGCCGAT
CTCGCGAATG CGCGGCTGTC GCAGCAAGCG CTGCTCGCGC AGACCTACTT CCAGCTGCGC
ACGTCCGATG CGCTGCAGAA ACTGCTCGAC GACACCGTGA AGTCGTACGG CGACTCGCTG
AGGCTCACGC AGAATCAGTA CGCGCAGGGC GTCGCCGCGC GCGCGGACGT GATCCAGGCG
CAGACGCAGC TGCAGAGCGC GCAGGCCGCG GCGATCGACA ACGGCGTCGC GCGCGCGCAG
TACGAGCATG CGATCGCGAC GCTGATCGGC GAGCCGGCAT CGACGTTCTC GCTGCCGCCG
AACCCGCTCA CCGCGCAACC GCCGATCACG CCGGTCGACG TGCCGTCCGC GCTGCTCGAG
CGGCGGCCGG ACATCGCGGC GGCCGAGCGC CGCGCAGCTT CCGCGAACGA GCAGATCGGC
GTGGCGATCG CCGCGTTCTT CCCGACGCTC ACGCTGTCCG CCACCGGCGG CTTCCAGAGC
TCGGTGTGGT CGCAATTGTT CACCTTGCCC GCGCGGTTCT GGACGGTCGG CCCGCAACTC
GCGGCCACGC TGTTCGACGC CGGCCTGCGC GCCGCGCAGA CCGATGCCGC CCGCGCAACC
TACGACCAGG ACGTCGCCGC ATATCGTCTC GCGGTGCTCA CCGCGTTCCA GGACGTCGAG
GACAACCTCG CGTCGCAGCG CATCCTCGCG CAGGAAGTCG ACGTGCAGCG GCAGGCCGTC
GACAGCGCCG AGCAAGCGCT CGCGATCGTC ACGAACCAGT ACAAGGCGGG CACGGTCGCC
TACCTGAACG TGCTGAGCGC GCAGACCACC GCGTTTACCG CGCAGCAGAA GCTCGCGACG
ATCGCCGGCC AGCGGATGGT GTCGTCCGTC GGGCTCGTGA AGGCGCTGGG CGGCGGGTGG
GATGCGTCGG ACATGGCGCG CGAGACGGGC GACGTGGCGG CGCCGGTGCC GGTGCCGGCG
TCCGGTGCGG CGGCGCCGGC CGCGACCTCA CCGTCAGCCG CCGCGCCGCT CGCGCAGAAG
TAA
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| Protein sequence | MPYAPLPRAF RPLSAAVAVA TAVLLAGCAV GPDYHRPDTS IPAAFKEAPA GWKVAQPADR
ADRGPWWSVY NDPQLDALIG KLNASNQTIA QSAAAYRQAR ALVAEARAAY FPTVGLTASG
SRARSGRTPT SSGASGFGSS SSISNSYSVG LDASWEPDLW GKVSRSVSAQ RAGEAAAAAD
LANARLSQQA LLAQTYFQLR TSDALQKLLD DTVKSYGDSL RLTQNQYAQG VAARADVIQA
QTQLQSAQAA AIDNGVARAQ YEHAIATLIG EPASTFSLPP NPLTAQPPIT PVDVPSALLE
RRPDIAAAER RAASANEQIG VAIAAFFPTL TLSATGGFQS SVWSQLFTLP ARFWTVGPQL
AATLFDAGLR AAQTDAARAT YDQDVAAYRL AVLTAFQDVE DNLASQRILA QEVDVQRQAV
DSAEQALAIV TNQYKAGTVA YLNVLSAQTT AFTAQQKLAT IAGQRMVSSV GLVKALGGGW
DASDMARETG DVAAPVPVPA SGAAAPAATS PSAAAPLAQK
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