Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mmar10_0105 |
Symbol | |
ID | 4283848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Maricaulis maris MCS10 |
Kingdom | Bacteria |
Replicon accession | NC_008347 |
Strand | - |
Start bp | 107287 |
End bp | 108801 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638139569 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_755339 |
Protein GI | 114568659 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 0.768383 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGGAT TGATGCAGAA GCTGGATATG CGCCAGGGAC AATCCCTGGT GATGACGCCC CAGCTCCAAC AAGCCATCAA GCTGTTGCAG CTCTCGAATA TCGAGCTTGC CGAGTTCGTC GAAGGCGAGC TGGAACGCAA TCCCCTGCTC GAACGCGATG ACAGTGGCGA ATCGGCCGAA TCGCAGCGCG AAGAGGGCCA GGGCGAGCCG CGCGAACTGG AATTGGCGGC ACCCTCGGCC GACGCCAATG ATTCCATCGA TGCCGATGTC GACATGATGC ATGGCGATGA TTCGAAGTCG GACCTGTCCG GCGTTGACGG GGTCGAGAGC GGCGCCGCCA TGGGCGCCGG GTCGGTCTCT GGTCACACAT CCGGCGGCAG TCGTGGCCCG GCGAGCGAAG ACTATGACGC CATCGCCAAC TCCTCGCGCG ACATTTCACT GGCCGATCAC CTGCATGAGC AATTATCGAT GGCGACCGGT GATCCGGTCG ACCGCCTGAT CGGCGCCCAT CTGATCGACC TGGCCGATGA TGACGGCTAT ATGCGTTCGG ACCTCGACGA GATCTCGGCC CAGCTGGGTG TCGAACGGGC CCGCGTCGAA GCCGTGCTCG ACCTGACCCA GACCTTCGAC CCGGCCGGCG TGATGGCCCG TGACCTGCCC GAATGCCTGG CCCTGCAGCT CAAGGACAAG GACCGGCTCG ACCCGGCCAT GGCGACCCTG CTGGACAATC TCGAGCGCCT CGCCAAGCAT GACTATGTCG CCCTGAAATC CCTGTGCGGC GTCGACAGTG AAGATCTCGA CGAGATGATC TCCGAGATTC GCGCCCTGAC GCCCAAGCCG GGGCATGCCT TCGGCAGCGA TTCGACCCGC GCGGTGGAAC CCGATGTCTT CATCCGTCAG TCGCCGGACG GCAGCTGGCA GGTCGAGCTG AATTCAGAGA CCCTGCCGCG CGTCCTGGTC AATAACAGCT ATTTCAATGA AATCTCGGCG GTTGCCAAAT CCGAGACCGA CAAGACCTTC ATCACCGAGT GCTCACAAAA TGCCTCCTGG CTGGTCAAGA GCCTCGACCA GCGCGCCCGG ACGATTCTCA AGGTGGCGAG TGAAATCGTG CGCCAACAAG ACATGTTCCT GGCTCATGGC GTCGCCTATC TGCGCCCGCT CAATCTGAAA ACCGTCGCGG ATGCCATCGG CATGCACGAA TCGACCGTCA GTCGCGTCAC CTCGAACAAA TACGTCGCCA CTGCGCGTGG CATGTTCGAG CTGAAATATT TCTTCACCTC CGCGATTCCG TCCGCCGGTG GCGGGGAGGC CCACTCTGCC GAGGCTGTCC GCCATCGCAT CAAGCTGATG ATCGGCCAGG AATCGGCCGA CGGGGTGCTG TCCGATGACA GTCTGGTCGA ACAATTACGG GATGAAGGGA TTGAAATCGC CCGCCGGACT GTGGCCAAAT ACCGGGAGGC GCTCAACATC CCGTCCTCGG TCCAGCGTCG TCGCATGCTA AAACGCGCTG GCTAG
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Protein sequence | MAGLMQKLDM RQGQSLVMTP QLQQAIKLLQ LSNIELAEFV EGELERNPLL ERDDSGESAE SQREEGQGEP RELELAAPSA DANDSIDADV DMMHGDDSKS DLSGVDGVES GAAMGAGSVS GHTSGGSRGP ASEDYDAIAN SSRDISLADH LHEQLSMATG DPVDRLIGAH LIDLADDDGY MRSDLDEISA QLGVERARVE AVLDLTQTFD PAGVMARDLP ECLALQLKDK DRLDPAMATL LDNLERLAKH DYVALKSLCG VDSEDLDEMI SEIRALTPKP GHAFGSDSTR AVEPDVFIRQ SPDGSWQVEL NSETLPRVLV NNSYFNEISA VAKSETDKTF ITECSQNASW LVKSLDQRAR TILKVASEIV RQQDMFLAHG VAYLRPLNLK TVADAIGMHE STVSRVTSNK YVATARGMFE LKYFFTSAIP SAGGGEAHSA EAVRHRIKLM IGQESADGVL SDDSLVEQLR DEGIEIARRT VAKYREALNI PSSVQRRRML KRAG
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