Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swol_1730 |
Symbol | |
ID | 4282581 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
Kingdom | Bacteria |
Replicon accession | NC_008346 |
Strand | - |
Start bp | 1971191 |
End bp | 1974862 |
Gene Length | 3672 bp |
Protein Length | 1223 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638138607 |
Product | exonuclease |
Protein accession | YP_754399 |
Protein GI | 114567245 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0842079 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATTA AGCAGATACG CTTTCAGAAT CTAAATTCCC TGGTGGGGGA ATGGATAATA GACTTTTCCC ACCCGGCCTA TTTGTCAGAT GGTATTTTTG CCATTACCGG ACCCACCGGA GCGGGCAAAA CCACCGTTCT TGACGCCATC TGCCTGGCCC TTTACGGGCG TACCCCGCGC CTGGAGCGGG TGAACAAGAG CAGCAATGAG ATTATGTCCC GGCATACCGG TAGTTGTTAT GCTGAGATAA GCTTTGAGAC CCGGGAGGGT TATTACCGCT GTCATTGGAG CCAGCAGCGG GCCCGGAAGA ATCCGCAGGG AGAGCTGCAA CCCCACAGAC ATGAGATAGC TGATGCTCAT AGCGGGCAAA TCCTGGAAAA CAAAATTCGG GATGTAGCCG CCCGGGTGGA GCGCATTACC GGCATGAATT TTACCCGCTT TACCCGCTCC ATCATGTTGG CCCAGGGGGG ATTTGCTGCC TTCCTGCAGG CTCCAGCGGA CGAGCGCGCC CCTATACTGG AGCAGATTAC CGGAACCGAG ATTTACAGTG AAATATCCAG GAAGGTGCAT GAACGGCAGC GGGAGGAAAA TGATCGTCTG AAGATCCTGC AGGCGGAAAT AAGCGGGATA AAGCTGCTCA CTACCGAGGA AGAAGAAGCT TTGCGCCAGG ACATGCAAGC TAAAATAGCC CGGGGAAAAG AGCGGCAGGA AGAACTAAAA GGCTTGCAGT TAGTCCTGGA CTGGCTGGAC CGCATGGTAG GATGGGAAAA TGAAATCAAG GACATAGAGG AACAATGGCA GCAATATTTA AAACGACAGC AGGCTTTTCA GGGGGAGGCC TGGCGTTTAG AGAAGGCCCG GCAAGCCATG GTTCTGGATG CTCCCTATAT CCGGCTAAAA GACCTGCGGG ATTTGCAGAA AAGTAATTTA AGTGAAATAG AACGAATCCG GGAAGAACTG CCCCGGCAGA AGGAGGCCGC TGGCAAGGCC GCAGAACGCT GGGAAAACAG CCGCCAGGAA TTAATTGAGC TTAAATTATT GCGTAAAAGT GAAGGGGAAA CGGCTAAAAA AGTACGGGAA ATGGATATCC TGCTTAAACA GCAGGGCCAG GTGATTAAAG GCATGGAAGT GGCTATTGGT ACCAGCGAGA ACGAGTGTAG CGCTTTACAG GGGGAAATAA CGTCCGGGGT AGAGAAGGCG AAAGAAATGG GCCAGGCCCT GCTCGCCATT GAAGAATACC GGCGGAAAAA TGCCCAGGAT GCGGCCTTGC TTGCTAACCT GACCGGTATT AGCCGGGTTT TTAAGCGCCT GGAGGAACTC TTATCAACCT GGCAGCAAAA GGGGCTTGAG CGTCAGCGGG CCGCGCTTGC TCTGCAATCC CTGCTGGATG CCAGGAAAGA AATAGCGGCC ACTCATGAAA GCAATAAAGA ACTGCAAAGA CAACAATATG ATGTTCTGCA GGCGGAGCAG GATAAGCTGG AAGAGGCTTT GCAGGGGTAT GAAATTGCCT GGTGGCGGGA CGAGTTGGAG CAATTTAAGG AGCAGAATGA TAAGCTGCAA AACCTGGGGC AGGTATGGGA CTGGATGGTT CAGCTGGAGG ATAATATAAG AAATGGGCGG GAATCAATAC AACAGTTGGA CGAGCAACAA AAGCGGCTGG TATGGGAAAT AGAGCAGGGG GAAAAGGAAG CTGGCCATTT AGCCGCCAGG ATTGATGGTT TGGAGACCCG GGTCTTATTG CTTAACCGTA TTCGTGATTT GGAAGAGGAA CGAGCTCAGC TGGAAGACGG CAAAGCCTGC CCCTTGTGCG GGGCTACCGA ACATCCCTAC GCTCAAGGTA ACATACCCCA GATGGATGAA AGCCAGAAGG AGCTCAATCA AGCCCGAAAG CAGCATAAGA AGCTAAGTGA GGATTTAAAA AAGAAGGAAA TACTAAGGGG CAAGTTAGAT AAGGAAGTGG AACATAGCGG CGCTGCAGTT AAAGAGGCAG AGCAACAACT GGAAAAAGAA AGCAAATTGC GCCGGGAGGG TATGAATGAA CTGGGTTTGG ATTTATCTGT GGTAAAGACC CGGGATGAGC TTGAGCGACT GGCAAATCAG AGTCGGCAAA ATATCATAAA CCATTCGCGG CAGCTTAAGA TGATAGAAAC ATGGCAAAAG AACATAGGGA CCTTGACTCT TCACTATGAA AAAAGCCGCA CAGCTTTTAT CCAATCGGAC AAAGAATTGC AGGCGGCTAT CTTGCAGCAA AAACAAGCCG ATCAGGAGGA TGAGCGCCTG CAGCAGGAAT ACCTGAGCTT GCAGGGTGAG CTGGAGCAAC TGCAAGAGGA AACCCTTCGG GAAATAAGCC CATACGGTAT GGCTGATTTA CCTCTGGAGC AGCTGGCTGC TATTCAGAAG GTCCTGGATG AACGGAAAAA GCGCTGGGAA GCTAAAGAGA AAGAGAAGCT GGACCTGGAG AAGGCGGTGG ACAAACTACA TAACGAAGTG GAACAGAAGC GAATCCTGCT GAAAGATAAA GCCTCGGCTT TGCAGAGTGA GCGGGAGCGG CTGAAGCAGC AGCAAGAACA ATACCGCCGG CAGCAGGAAA CCCGTTTTGA ACTATATGGC AAGCGCGACC CGGATAAAGA AGAAGCTCGC CTGGACGAAG AAATAGGCCT GGCTGAGGAA TTGGTCAACC GGACCTATGA AGATATGCAA GAGCTGCAGC GTCACCAGCT GCGCTTGGAA GAGCGGGAAA AAACCCTGGC GGTTACTGTA CAAAATCGCG CGCCGGAACT GCAAAGTTCA GAGGAGAGTT TTACCCGACA GCTACAGCAG GCCGGCTTTG AGCAGGAAGA GGATTACCGG CAAGCCAGAC TTTCTCTAGA GGAACAGCAG GCCCTGGCCC AAAAAGCGGA AGCTTTAACC AAGGAGGCCA CTGAACTGCA AACTCGCCTG AAGGATCGGC AGGAAAAACT GCAGCGAGAA AAAGAGCAGA AACTAAGCGG AGAAGCCCGG GAAGTACTGG AGGAAAAACA GCGGCTGGGT GAGCAGGAGT TAATTGACCT AAGGGAAGAA ATCGGAGCCG CCAGGAGAAC ACTGGAAGAC AGTGAGCAAA GCCGCCGGCG AATGCAGACG CAGCTGCAGC GGGTGGAGGA ACAAAAGAAG GAACTGCAAC GCTGGCAGCT ATTGCATGAT CTAATTGGTT CCGCTGATGG CAAGAAATAC CGTAATTTCG CCCAGGGATT GAGCTTCGAT ATCATGATCA AGCATGCCAA TCGCCAGCTG CATAAGATGA GTGACCGCTA CATATTACTG CGCAGTCAGG AGCAGCCCCT GGAGTTAAAT ATCATTGATA ATTACCAGGC GGGAGAAATC CGCTCCACGG CCAACCTCTC CGGGGGGGAG AGTTTCCTGG TCAGCCTGGC CCTGGCCCTG GGACTATCCC AGATGGCCAG CCGCAAGGTC AGCGTGGATT CATTGTTTTT AGACGAAGGC TTTGGTGCTC TGGATGAAGA TGTTCTCGAT ACCGCCTTGA ACACCCTGGC CGGGCTGCAG CAGGACGGCA AGCTAATCGG CGTAATTTCT CATGTCCCCG CTTTAAAAGA GCGCATCAGC ACCCAGATAG AGGTTATAAC CCAATCCGGA GGCCGCAGCA TCCTGCAAGG CCCCGGCTGC CAGCGCCAGT AG
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Protein sequence | MKIKQIRFQN LNSLVGEWII DFSHPAYLSD GIFAITGPTG AGKTTVLDAI CLALYGRTPR LERVNKSSNE IMSRHTGSCY AEISFETREG YYRCHWSQQR ARKNPQGELQ PHRHEIADAH SGQILENKIR DVAARVERIT GMNFTRFTRS IMLAQGGFAA FLQAPADERA PILEQITGTE IYSEISRKVH ERQREENDRL KILQAEISGI KLLTTEEEEA LRQDMQAKIA RGKERQEELK GLQLVLDWLD RMVGWENEIK DIEEQWQQYL KRQQAFQGEA WRLEKARQAM VLDAPYIRLK DLRDLQKSNL SEIERIREEL PRQKEAAGKA AERWENSRQE LIELKLLRKS EGETAKKVRE MDILLKQQGQ VIKGMEVAIG TSENECSALQ GEITSGVEKA KEMGQALLAI EEYRRKNAQD AALLANLTGI SRVFKRLEEL LSTWQQKGLE RQRAALALQS LLDARKEIAA THESNKELQR QQYDVLQAEQ DKLEEALQGY EIAWWRDELE QFKEQNDKLQ NLGQVWDWMV QLEDNIRNGR ESIQQLDEQQ KRLVWEIEQG EKEAGHLAAR IDGLETRVLL LNRIRDLEEE RAQLEDGKAC PLCGATEHPY AQGNIPQMDE SQKELNQARK QHKKLSEDLK KKEILRGKLD KEVEHSGAAV KEAEQQLEKE SKLRREGMNE LGLDLSVVKT RDELERLANQ SRQNIINHSR QLKMIETWQK NIGTLTLHYE KSRTAFIQSD KELQAAILQQ KQADQEDERL QQEYLSLQGE LEQLQEETLR EISPYGMADL PLEQLAAIQK VLDERKKRWE AKEKEKLDLE KAVDKLHNEV EQKRILLKDK ASALQSERER LKQQQEQYRR QQETRFELYG KRDPDKEEAR LDEEIGLAEE LVNRTYEDMQ ELQRHQLRLE EREKTLAVTV QNRAPELQSS EESFTRQLQQ AGFEQEEDYR QARLSLEEQQ ALAQKAEALT KEATELQTRL KDRQEKLQRE KEQKLSGEAR EVLEEKQRLG EQELIDLREE IGAARRTLED SEQSRRRMQT QLQRVEEQKK ELQRWQLLHD LIGSADGKKY RNFAQGLSFD IMIKHANRQL HKMSDRYILL RSQEQPLELN IIDNYQAGEI RSTANLSGGE SFLVSLALAL GLSQMASRKV SVDSLFLDEG FGALDEDVLD TALNTLAGLQ QDGKLIGVIS HVPALKERIS TQIEVITQSG GRSILQGPGC QRQ
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