Gene Swol_0891 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwol_0891 
Symbol 
ID4282058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophomonas wolfei subsp. wolfei str. Goettingen 
KingdomBacteria 
Replicon accessionNC_008346 
Strand+ 
Start bp1008351 
End bp1009406 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content49% 
IMG OID638137759 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_753580 
Protein GI114566426 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.00127491 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTCGTA AAAGCAGGGT AATCAAAGTG GGAACAGTCC CGGTCGGGGG AGAGTACCCG 
GTGGTAGTGC AATCAATGAC TAGCACCGAT ACCCGTGATA TTGAAAGGAC CGTAAAACAG 
ATTAAGCAGA TGGAAGCCGC CGGCTGTGAG CTGGTACGGG TGGCGGTGGT TGATGAGGAA 
GCTGCCCAGG CGATTTCCCG CATTAAACAG AAGATAAATA TCCCCTTGAT TGCCGATATC 
CATTTTGATC ATCGCCTGGC CTTGAAAAGC ATAGAGGCTG GAGCCGATGG CTTGCGGATA 
AACCCGGGCA ATATAGGGGA AGAGAAGAAA CTCTGTGAAG TAGTGAAGGC TTGCCAGGAG 
AAAAAAACAC CCATAAGAAT CGGGGTAAAT GCTGGTTCTT TGGACAAAAG GATCTTGGAT 
AGATTCGGTG GAATCTCGGC CCAGGCCATG GTGGCAAGCG CCCTGGAAAA TGTAAAGCTT 
TTGGAAGATA TGGACTTCCA TGAAATAAAG TTGTCGTTAA AAGCCTCCTC GGTTATGCTG 
ACGGTGGAAG CCTACCGCCT GTTGGCCGCA AAAGTTGATT ATCCCTTGCA TCTTGGAATT 
ACCGAAGCCG GTACCAAGGA TCGCGCTTTG ATTAAGTCGG CCCTGGGAAT AGGAATGCTT 
TTATACGAAG GGATTGGAGA TACCATAAGG GTTTCCTTGA CTGCTGATCC AGTGGATGAG 
GTATGGGCAG CCTATGAAAT ATTACGCAGT TTGGGCCTGC GCCAGCGGGG AATTGAACTG 
ATTTCCTGTC CCAGTTGCGG CCGCTGTGAG ATTGACTTGA TAGAAACCGC CGAAGAGGTG 
GATAGGAAAA TCAGGCATTA CCAGCAAGCC TTGAAGGTGG CGGTTATGGG TTGTGTTGTC 
AATGGACCGG GGGAAGCCCG GGAAGCTGAT CTTGGTATTG CCGGAGGACG GGGATTTGGT 
TTATTATTCA AGAACGGTGA GATAATTAAA AAAGTACCGG AAAGCGAGCT GGTGGCAGTG 
CTTTTGCGGG AAATTGAGGA TAGCAGTAAA AAGTAA
 
Protein sequence
MRRKSRVIKV GTVPVGGEYP VVVQSMTSTD TRDIERTVKQ IKQMEAAGCE LVRVAVVDEE 
AAQAISRIKQ KINIPLIADI HFDHRLALKS IEAGADGLRI NPGNIGEEKK LCEVVKACQE 
KKTPIRIGVN AGSLDKRILD RFGGISAQAM VASALENVKL LEDMDFHEIK LSLKASSVML 
TVEAYRLLAA KVDYPLHLGI TEAGTKDRAL IKSALGIGML LYEGIGDTIR VSLTADPVDE 
VWAAYEILRS LGLRQRGIEL ISCPSCGRCE IDLIETAEEV DRKIRHYQQA LKVAVMGCVV 
NGPGEAREAD LGIAGGRGFG LLFKNGEIIK KVPESELVAV LLREIEDSSK K