Gene Swol_0417 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSwol_0417 
Symbol 
ID4281250 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSyntrophomonas wolfei subsp. wolfei str. Goettingen 
KingdomBacteria 
Replicon accessionNC_008346 
Strand
Start bp495252 
End bp496325 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content48% 
IMG OID638137305 
Producturoporphyrinogen decarboxylase 
Protein accessionYP_753126 
Protein GI114565972 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01463] methyltransferase, MtaA/CmuA family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCTG TCCCCAAGGA TGAAATGACA CCGCTCGAAA GAATGGCCGC TTTTGCCGCA 
GGCAAGCCGT ATGACCGGAT TCCCTGCAGC AGTTTTAGCG GTGAAACTGC CTGCCATTTT
ATCGGAACCA CGGTATCAGA GTACCGTCAT TCCGCTAAAT TGATGGCTAG AGTGGAAACG
GTTACATATA AGATGTTTGG TCATGACGGT GCCGGAGTCG GCCCAGGATT CCTGGCCCTG
GCCGAAGCCA TGGGAACCGA ACTAAAATAT CCGGAAGACA ATATACCCTT CGTGGCCAAT
CCTGTTCTGA AAAACTGGGA TGATTTTGAT AAGCTGGAAC CCGCTGACCC TCATAAGGAT
GGAAAGTTGC CCATCTATTT AGAAGCCCTG GCCATGATCA AGGATGCTAT CGGGGATGAA
GTTCCAATAG GTAGTAGTGT CGGGGGACCA TTTACCACTG CCGCATTAGT CAGAGGAACC
GAGAATTTTC TGAAGGACTT GCGGCGTAAT CCGGAGATGG CTCATCGTCT GCTACAACTG
GTTACTAATA CTACCTTGAA TTATATAGAT GCAGTAATGG ATATGGGCTG TAGCGTAAGT
ATTGGCGACC CGACCGCATC GGGAAGCCTG CTAAGTGTTA AACAGTTTAG AGAATTCGCC
AAACCTTACC TTTCTAAACT GGCAGATCGG GTAATAGAGC GGACCGGCAA AGGCCCAATG
CTGCATATTT GTGGTGATTC AACTCCTATT TGGTCGGATA TGGCCGATAC CGGAGCGCCA
ACCCTCAGCC TGGACAATGT TATCGATTTG GCTGAAGCCA AAAAGGTGGT GGGGGAACGG
GTTTGTATTA TGGGCAATGT TAAACCGATT GATACCATTA TGAAAGGAAG CCATCAACAG
ATCGAGGCCG AAGTTAAGGA ATGTCTGCGC AAGGCCTATG ACAGCCCCAA AGGCTTTATT
CTGGCGGTCG GTTGCCAGGT CCCACTGGGA ACTACAGCCG ATAATTTTAT GTGTTTTATG
AATGCCGCTC GTAAATATGG GCGATATCCA TTAAACCCGG ATAATTTTAT TTAA
 
Protein sequence
MNAVPKDEMT PLERMAAFAA GKPYDRIPCS SFSGETACHF IGTTVSEYRH SAKLMARVET 
VTYKMFGHDG AGVGPGFLAL AEAMGTELKY PEDNIPFVAN PVLKNWDDFD KLEPADPHKD
GKLPIYLEAL AMIKDAIGDE VPIGSSVGGP FTTAALVRGT ENFLKDLRRN PEMAHRLLQL
VTNTTLNYID AVMDMGCSVS IGDPTASGSL LSVKQFREFA KPYLSKLADR VIERTGKGPM
LHICGDSTPI WSDMADTGAP TLSLDNVIDL AEAKKVVGER VCIMGNVKPI DTIMKGSHQQ
IEAEVKECLR KAYDSPKGFI LAVGCQVPLG TTADNFMCFM NAARKYGRYP LNPDNFI