| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swol_0011 |
|---|
| Symbol | |
|---|
| ID | 4281314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008346 |
|---|
| Strand | - |
|---|
| Start bp | 14740 |
|---|
| End bp | 16320 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638136905 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_752741 |
|---|
| Protein GI | 114565587 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain
[COG2206] HD-GYP domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.140902 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAGAACA TGCATAGTTT GCTAAGACGG CAGTTACGCA AGCAATTCGG GAACAATATT
CCGGATATTC CCGGGTGGGA TACATTTCTT AAGCAGGTAA ATGACGCTTA CCAGGAATTC
GATGCTGATC GAAATATGTT GGAACGCGCG TTGGAAATAA GTTCCCAGGA ATTGCTGGAA
ACCAACTCGC AACTCCGGGC TGTATTAGAA GCTTTTCCCG ATGTTTTTTT GCTGCTGGAC
TCCCAGGGTA TTATTATTGA ACTAAAAGCC GGCCGTTCCA CTGACCTGTA TATGTCCCCG
GAGCAACTTC TAGGCCATCA CATCGAAGTA ATTCATCCTG ACATCAGTAA TTCGCCCTTT
GCCACGGCTG TAGAACAAGT ACTGCAAAGC GGAAAGCTCA TTAGTTTCGA GTATCCCGTG
CTGCTAAACC AACAGGAACA TTATTTTGAA GCCAGGTTGC TGCCGGTATC CGGGGACCAT
GTCTTCGTTA TCATCCGAAA TGTCACCGAA CGCCGTATCA TGGAAGACCA ATTGCGCTAT
CTTAGTATGC ATGATGCTCT GACCGGTTTG TATAACCGCT CCTATTTTAA GCTGGAAACT
GCCCATCTGG AAAAGCAATC CCGTCGCCCG ATTGGTCTAA TTGTTGGCGA TGTCGATGGC
CTGAAACTGG TTAATGATAC CCTGGGCCAC GAAGCAGGTG ATGACCTGCT TATTAAAGCA
GCTCATGTTC TTAAAGACTC CCTGCGTGAT TGTGACTTTG TAGCCCGTAT AGGTGGTGAT
GAATTCGCCG CTATTCTTTA CGATTGCAAT ACCCCGGGAA TTGAAGGTGT TATTAAACGT
ATTGAAAAAA ATATTGCCTT GGTGAACTCT CGTAATCCGA CCCTCCCCTT AAGTATTTCC
CTGGGCTATG CCGTAAGAAA TGATGCCTCT AAGAGCATGG ATGAACTCTT CAAGGAAGCT
GATGACAATA TGTACAAGGA AAAGCTTGAC CATCGCAAGA ATTTTAATGC TAACCTGGTC
AGCACCCTAA TGAGTTCTAT GGATGAAAAA CATTTTTTCA ATCAAGACCA TGTTGAGCAG
ATGCAGGAGT TGGTGTGCAT TATGGCTGAA GCTCTGGATA TGTCTCCAAG TCAAATATCA
TGCATGAACC TACTAGCACA GTATCACGAC ATAGGCCAGG TAGGGATATC TGATGCTGTT
CTTTTTAAGA AAGGCAAACT TAATTCTCAA GAGCGTTTAC AAATAGAAAG GCATCCAGAA
ATAGGCTATC GTATTGCCCG TTTATCTCCT GAATTGATGC CGATAGCTGA TTGGATACTC
AGACACCACG AGTGGTGGAA TGGACAGGGT TACCCCTGTG GCCTGGCAGG TGAGGATATC
CCCCTGGAGT GCCGCATACT GGCCCTGGTT GACGCCTATA GTGCCATGAC CAGCGATCGT
CCCTACCGTA AAGCCATGAG TCATGAAGAG GCTATTGAGG AGATAAAAAG TAAAGCCGGA
ACCCAGTTTG ACCCTGAATT AGTCCGCTTA TTTCTGTCAG AAATAGAAAC AAAATTCCCT
TCACCCGGGT CAAAATCATG A
|
|---|
| Protein sequence | MENMHSLLRR QLRKQFGNNI PDIPGWDTFL KQVNDAYQEF DADRNMLERA LEISSQELLE
TNSQLRAVLE AFPDVFLLLD SQGIIIELKA GRSTDLYMSP EQLLGHHIEV IHPDISNSPF
ATAVEQVLQS GKLISFEYPV LLNQQEHYFE ARLLPVSGDH VFVIIRNVTE RRIMEDQLRY
LSMHDALTGL YNRSYFKLET AHLEKQSRRP IGLIVGDVDG LKLVNDTLGH EAGDDLLIKA
AHVLKDSLRD CDFVARIGGD EFAAILYDCN TPGIEGVIKR IEKNIALVNS RNPTLPLSIS
LGYAVRNDAS KSMDELFKEA DDNMYKEKLD HRKNFNANLV STLMSSMDEK HFFNQDHVEQ
MQELVCIMAE ALDMSPSQIS CMNLLAQYHD IGQVGISDAV LFKKGKLNSQ ERLQIERHPE
IGYRIARLSP ELMPIADWIL RHHEWWNGQG YPCGLAGEDI PLECRILALV DAYSAMTSDR
PYRKAMSHEE AIEEIKSKAG TQFDPELVRL FLSEIETKFP SPGSKS
|
|---|
| |