Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swol_0005 |
Symbol | |
ID | 4281305 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Syntrophomonas wolfei subsp. wolfei str. Goettingen |
Kingdom | Bacteria |
Replicon accession | NC_008346 |
Strand | + |
Start bp | 4057 |
End bp | 5958 |
Gene Length | 1902 bp |
Protein Length | 633 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638136896 |
Product | DNA topoisomerase (ATP-hydrolyzing) |
Protein accession | YP_752735 |
Protein GI | 114565581 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01059] DNA gyrase, B subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGTTAGAAA GAGAATACAA TGCCTCTGAT ATCCAGGTAT TGGAAGGCCT AGAGGCAGTG CGTAAAAGAC CGGGGATGTA TATTGGTTCA ACCGGGCCTA AAGGTTTACA TCACCTGGTT TTTGAAATAG TGGACAATAG TATAGACGAA GCCGTAGCCG GATTCTGTAA AAAGATAGAA GTAACTATTA ATCAGGACAA TAGTATTACG GTTTGTGATG ATGGTCGCGG TATTCCGGTG GACATTCACC CTGCTATGGG AATTCCCGCG CTGCAAGTTA TTTTAACTAC CCTTCATTCC GGGGGAAAGT TCGGCGGTAG CGGTTATAAT ATTTCCGGGG GCTTGCATGG AGTGGGATTA TCGGTAGTAA ATGCTCTTTC CCGGCGAATG GAAGTCCGGG TAAAAAGGGA TGGGCATATA TACCAGCAGG ATTATGAACG GGGAAACCCG GTGAATGAGA TAAGGATAAT AGGCGAGAGT AAAGAAACCG GAACAAGTAT TTGTTTTTTT GCGGATGATG AAATATTTGA AGAAATAAAT TTTGAAAGAG AAATCCTCTT GCAAAGATTG CGGGAATTAT CTTTTCTCAA CCGGAATCTA AAAATATCGC TGCGCGATGA GAGAGAAGAA GAAGTTTTTT ACCAGGAATT TCACTATTCC CATGGTCTTA AAGATTTTGT GGCTTATATT AATAAAAATA AAGAGGTTAT TAATGATAAC CCCATCTATT TTGAAAACAA GAAAGATGAT GTTATCGTAC AGGTGGCAAT TCAATACAAT AACAGCTATA GCGAAAACCT TTATTCTTTT GCCAATAATA TCCGTACCCA GGAAGGCGGT ACCCATGAAA TAGGCTTTAA AAATGCCTTA ACCCGGGTGA TTAATGATTA TGCCAAGAAA AATAATATAC TTAAAGAAAA TGATAATAAT TTATCCGGCG AAGATATCCG CGAGGGAATA GCCGCAATTA TATCGGTTCT GGTAAAAGAC CCTCAATTTG AAGGACAGAC CAAAACCAAG CTGGGCAATA CCTATATTCG AGGAATAGTT GAAAGCATAG TCTTTGAACA TGTGGAAGAC TATCTTAACG AAAACCCGGC GGCAGCACGC AAATTGCTGG ATAAGGCCAT TTCCGCCCGT CGGGCCCGGG AAGCGGCTAA AAAAGCCCGG GAACTGACCC GGCGGAAAAA TGCCCTGGAG TCAACGGCCC TCCCTGGCAA GCTGGCCGAT TGCAGCAACA AAAATCCGGC TGAATCAGAG TTGTTCATTG TGGAGGGAGA CTCGGCCGGA GGATCGGCTA AACAAGGAAG GGATCGCACC TACCAGGCTA TATTGCCCTT GCGAGGAAAA ATACTAAATG TGGAAAAAGC GCGCCTGGAT AGGGTACTAT CCAGTGAAGA AATTAGAAAC CTTATTACCG CCATGGGTAC AGGAATAGGC GAAGACTTTG ATATCAAGAA AGCTCGCTAC CACAAGCTTT TTATTATGAC CGATGCTGAT GTTGACGGAT CTCACATCCG GGTTTTATTA CTTACCTTCT TTTATCGATA TATGAAAGAG TTAATAGAAG AAGGATACCT TTATATAGCC CAACCCCCCC TCTATGGCCT GAAAAGAGGA AAAGAGATTA AATATTTCTA CAATGATGCT GATTTGAATG CCTTCCTCAG CCAGACGGAA CAGAAGTGGT CTATTCAAAG ATATAAAGGC CTGGGGGAAA TGGATCCGGA ACAATTGTGG ACAACTACTA TGGACGCAGA AAGCAGAACC GTATTAAAGG TAACCATAGA AGACGCGATA AAAGCCAATG ATATCTTTTC GGCCTTGATG GGGGATAATG TACAGCCACG GCGTGAATTT ATTGAGAGCA ATGCCAGGTA TGTAGCTAAT CTGGATATTT AG
|
Protein sequence | MLEREYNASD IQVLEGLEAV RKRPGMYIGS TGPKGLHHLV FEIVDNSIDE AVAGFCKKIE VTINQDNSIT VCDDGRGIPV DIHPAMGIPA LQVILTTLHS GGKFGGSGYN ISGGLHGVGL SVVNALSRRM EVRVKRDGHI YQQDYERGNP VNEIRIIGES KETGTSICFF ADDEIFEEIN FEREILLQRL RELSFLNRNL KISLRDEREE EVFYQEFHYS HGLKDFVAYI NKNKEVINDN PIYFENKKDD VIVQVAIQYN NSYSENLYSF ANNIRTQEGG THEIGFKNAL TRVINDYAKK NNILKENDNN LSGEDIREGI AAIISVLVKD PQFEGQTKTK LGNTYIRGIV ESIVFEHVED YLNENPAAAR KLLDKAISAR RAREAAKKAR ELTRRKNALE STALPGKLAD CSNKNPAESE LFIVEGDSAG GSAKQGRDRT YQAILPLRGK ILNVEKARLD RVLSSEEIRN LITAMGTGIG EDFDIKKARY HKLFIMTDAD VDGSHIRVLL LTFFYRYMKE LIEEGYLYIA QPPLYGLKRG KEIKYFYNDA DLNAFLSQTE QKWSIQRYKG LGEMDPEQLW TTTMDAESRT VLKVTIEDAI KANDIFSALM GDNVQPRREF IESNARYVAN LDI
|
| |