| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4063 |
|---|
| Symbol | |
|---|
| ID | 4280954 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4842475 |
|---|
| End bp | 4844103 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638136888 |
|---|
| Product | 60 kDa inner membrane insertion protein |
|---|
| Protein accession | YP_752727 |
|---|
| Protein GI | 114565213 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000239208 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCTC AACGCAATAT ATTGCTAATC GGTCTGCTGT TTGTCAGCTT TTTAATGTGG
CAACAATGGC AAACAGATAA AGCACCAAAA CCAGCAACAG CACAAACTGT TACTCAAACT
AACGCCGCCT CACAACACAG TGCTGACGTT CCAGAAGCAG ATATATCTGG AGTACCAGTA
GAATTACCTG CAAATAAAAA CCTTATTAGC GTTAAAACTG ATCAGCTTGA TATTAAAATC
AGCCCGATTG GTGGTGACAT AGTTTATGCC GCATTAGTGG AACATAAACG CGAAATTGAC
AGTAGTGATC CATTTGTCAT TTTAGAGCAA AAGAACAATT TCACTTATAT CGCCCAAAGC
GGACTTATTG GTCGTGATGG TATTGATAGT AGTGCCAATG GTAGAGCAGC TTATAGTGTT
CAAACCAATT CATATTCTTT AGCTGATGGT AAAGACACAT TAACCGTGCC ATTTACTTAT
ACAGCAGACA ACGGTGTCAC CTACGTAAAA AGCTTTACGT TCACCCGTGG TCAATATGAT
GTCGGCGTAG ATTACAGCAT CAGCAATACT TCAGCTGCAC CGTTACAAGT GCAGATGTAT
GGTCAAATTA AGCAAACGAT TAAAGAATCT GAAAGCAGCA TGATGATGCC AACCTACCGT
GGTGGTGCTT TCTCGGCTCA AGATACTCGT TATGAGAAAT ATAACTTTGA CGATATGGCT
GACAAAAATC TTGCTAAAGT AACACTCGGT GGTTGGGCTG CAATGCTACA ACATTACTTT
GTGTCAGCTT GGGTGCCGCC AGCAACCGAT TCAAACACCA TTTTCTCAAG TATGAGTGCT
GGTGGAATGG CTAATATTGG TTTCCGTGGT GCGGTATATG ATATTGCTCC TGGCGCGACT
CAAGAAATTA ACTCGCAGTT TTATGTTGGT CCAAAAAACC AAAAAGAGCT TTCAGCTATT
TCTGAAACCT TAAACTTGGT TGTTGATTAC GGCTTCTTAT GGTGGTTAGC CATTCCAATC
CATTGGTTAT TGATGTTCTA TCAATCATTT GTGGGTAATT GGGGTGTAGC GATTATTTTG
ATCACCCTCA CCGTCCGTGG TGGTCTATAT CCGCTGACTA AAAAGCAATA TACCTCTATG
GCCAAAATGC GTAATCTGCA GCCTAAATTG ACAGAGATGA AAGAACGCTT TGGTGATGAC
CGTCAAAAGA TGGGTCAAGC TATGATGGAA CTGTATAAGA AAGAAAAAGT AAACCCTATG
GGCGGTTGCT TACCTATTCT GTTACAGATG CCAATTTTCA TCGCATTATA CTGGGTACTA
CTAGAAAGCT ATGAATTACG CCACGCGCCA TTCATGCTTT GGATTACTGA CTTATCAGTT
CAAGATCCAT ACTATGTATT GCCATTGTTA ATGGGCTTAT CAATGTTCTT GATGCAAAAA
ATGCAACCGG TAGCGCCAAC AATGGATCCA ATGCAAGTGA AAATGATGCA GTGGATGCCA
GTTATCTTTA CCGTATTCTT CTTATGGTTC CCAGCTGGTC TAGTACTTTA CTGGTTAGTG
GGTAACTTAG TTGCAATCAC ACAGCAGAAA ATTATTTATG CTGGCCTTGA GAAAAATGGC
ATAAAATAA
|
|---|
| Protein sequence | MESQRNILLI GLLFVSFLMW QQWQTDKAPK PATAQTVTQT NAASQHSADV PEADISGVPV
ELPANKNLIS VKTDQLDIKI SPIGGDIVYA ALVEHKREID SSDPFVILEQ KNNFTYIAQS
GLIGRDGIDS SANGRAAYSV QTNSYSLADG KDTLTVPFTY TADNGVTYVK SFTFTRGQYD
VGVDYSISNT SAAPLQVQMY GQIKQTIKES ESSMMMPTYR GGAFSAQDTR YEKYNFDDMA
DKNLAKVTLG GWAAMLQHYF VSAWVPPATD SNTIFSSMSA GGMANIGFRG AVYDIAPGAT
QEINSQFYVG PKNQKELSAI SETLNLVVDY GFLWWLAIPI HWLLMFYQSF VGNWGVAIIL
ITLTVRGGLY PLTKKQYTSM AKMRNLQPKL TEMKERFGDD RQKMGQAMME LYKKEKVNPM
GGCLPILLQM PIFIALYWVL LESYELRHAP FMLWITDLSV QDPYYVLPLL MGLSMFLMQK
MQPVAPTMDP MQVKMMQWMP VIFTVFFLWF PAGLVLYWLV GNLVAITQQK IIYAGLEKNG
IK
|
|---|
| |