| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_4004 |
|---|
| Symbol | |
|---|
| ID | 4280895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4772179 |
|---|
| End bp | 4772991 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136825 |
|---|
| Product | transcriptional regulator, ArsR family protein |
|---|
| Protein accession | YP_752668 |
|---|
| Protein GI | 114565154 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0394] Protein-tyrosine-phosphatase
[COG0640] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA AAACTGTGTT GTTTCTATGT ACTGGCAATT CGGCGCGTTC GCAAATGGCT
GAGGCGTTGT TACGTAATAA AGCGGCTGAT CAATTTGATG TGTTTAGTGC CGGGACATCG
CCAGAGCAAG TCGATGTTCG AACTATTGAG GCTATTACTC GCTTCGGTAT TGATGCGGGT
GATTTAGTGT CTAAGCACCT ACAGACTTTT GCTGGCAAAG ATTTCGATTA TGTTATTACC
CTATGCGATA AAGCCAATAA TGAATGTCGT AGTTATCCTG GCGCGGGTAA GCAACTGGCA
TGGGACTTTC CCGATCCTAA AAATCGCGCA GGCGAGCAAC CATTTTTTTT GACCTTACAT
GACATCAATA ACCGCCTGAC GATGTTTCTG TTAGTGGAGC AACAAACTAC GGGTCTAAGG
CCATTTGAGT TGGTGCCCGA AGCCGAAGTA CCTGAATTCA AAGAAGTTGA CCCCATTACA
TTTTATAAAT GCCTTACCGA TGACATTCGC TTAAAAACCT TAATGTTGAC CCATTATCAT
GGTGAGCTGT GTGTATGCGA GTTAATGGCG GCGCTTGATG AAGAGAGCCA ACCTAAAGTA
TCGCGCAATT TAGCCTTATT GAAAAAGGCC AATATTCTAA GCGACAGAAA ACATGGCCAG
TGGGTGTTTT ATCGTATCAA TCCTAATTTA CCTCTCTGGT CCAAATCAGT AATAGCAGAA
ACCACCGAAA ACAACCTTGG GTTGATAATG CCGTCATTAC AGCAATTACA CACAATGCAA
AACCGGCCTA ATAAAGTGAG CTTTTGTCGT TAA
|
|---|
| Protein sequence | MKKKTVLFLC TGNSARSQMA EALLRNKAAD QFDVFSAGTS PEQVDVRTIE AITRFGIDAG
DLVSKHLQTF AGKDFDYVIT LCDKANNECR SYPGAGKQLA WDFPDPKNRA GEQPFFLTLH
DINNRLTMFL LVEQQTTGLR PFELVPEAEV PEFKEVDPIT FYKCLTDDIR LKTLMLTHYH
GELCVCELMA ALDEESQPKV SRNLALLKKA NILSDRKHGQ WVFYRINPNL PLWSKSVIAE
TTENNLGLIM PSLQQLHTMQ NRPNKVSFCR
|
|---|
| |