| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3988 |
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| Symbol | |
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| ID | 4280879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4754160 |
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| End bp | 4756556 |
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| Gene Length | 2397 bp |
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| Protein Length | 798 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136809 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_752652 |
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| Protein GI | 114565138 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000235152 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAATAA GCACATCTAA AAAATTTGTA TTGAGTACGC TAGCGGTGAT GGTTAGTTCG
AGCTTGTGGG CTGCTGAAGC AGATACTGCG GAAACCAAGA AAGATGCCAT TGGCCTTGAG
CGCATTACGG TAACGGGTGT GGCACGTGGT ACACGTGTAA TGGACTCGAG CGTGTCGGTG
AGCAGTGTGT CGCCAGAAGA TTTAGCCATT AGCTCACCTC GTTCATCAGC CGAAGCGTTC
CGTATTATTC CGGGCATGAA GGTTGAATCG ACTGGTGGTG AAGGTAACGC CAACATTGCG
GTACGCGGTT TGCCTGTTGC CTCAGGTGGA GCTAAGTTCT TGCAAATTCA AGAAGATGGC
TTACCTATTT TACAGTTTGG TGATATTGCA TTTGGTAATG CGGATATTTT CTTACGTATT
GATTCTACAA CACAAACTAT TGAATCAATC CGTGGTGGTT CAGCATCAAC AGCTGCCAGT
AATGCACCAG GCGGTATTAT TAACGTTATC AGTAAAACAG GTACCAGTGA TGCTGGCAGT
ATTTCATCTA CTGTAGGCCT AGATTACGAT ACTTTGCGTA CTGATTTTGA ATACGGCACC
AGCATTAATG ACTCGATGCG TTTTCACATC GGTGGCTTTG TGCGCACCGG CGATGGCCCG
CGAGACCCTG GTTACACCGC GAACAAGGGT GGCCAAATTA AAGCTAACTT AACCAAAGAG
TTTGATTCTG GTTATGTGCG TTTATATGTA AAGCACTTAA ATGATAAGAG CATTGGTTAT
TTGCCTATGC CAATGTATTC CGATGGTAGC TCAATACCTG GATTTGATGC TCAATCTGAT
ACGGTTCATT CAGCTAACAT GTTATCAACC CTGCGCTTAG ATGCTAACGG CAATATTAGT
CGTGGTGATA TGCGTGATGG TATGAATCCG ATTGTTAACT CGGTGGGACT AGAAGCCTCA
TTTGATTTAG GTGACGATTG GTTAGTAGAA AACCGTTTCC GTATCTCTGA TGTCAGCGGT
AATTTTATGT CTTTAATGCC AGCAGAAGTG GGCAACAGCT CAAGTATTGC TAGCAGTATT
GGTGGCGCAG GTTCGACACT TATTTATGCT AACGGCGCTA AAGCAGGCCA AGCCTTTGAC
AGTGACCTAG CAATGCGGGT GCACAGTTTT GATGTGACCA TGAATGACTT TGGCTCTATC
GTCAATGACA TGAAATTAAC CAAGACGTTT GACGATTCTA ACGTCACTTT GGGTTTTTAT
ACAGCTACAC AAAATATCAA TATGACGTGG ATGTGGAACT CTTACTTAAT GGAAGTGCAA
GGTGATAATG CCGCACTTTT AGATGTGGTC GCCGCAGATG GTACATCTTA CTCTGATAAT
GGTTTATACG CTTATGGCGT GCCTTATTGG GGCAATTGTT GCCAACGTAA TTATGATTCA
GACTACACCA TTAAAGCCCC GTATATTGCA GCGTCATCTA AGTTCGGCGA TTTATCATTA
GACGGTAGCG TGCGCTATGA CTCTGGCGAT GCCAGTGGTT ACTATGCTGG CAATGTGCAA
TCACAAGTGG ATATGAACCG TGATGGCGTG ATTTCTCAGC CTGAGTTAAG TGTGTCGTCA
ATTGATAATG CTAACCCACA GTTAGTGAAT TATGACTGGG GATACTTATC TTACTCATTA
GGTGCTAACT ACCAAGTGTC TGAAGATTTA GCTGCATTTG GTCGTATCAG CCATGGTGGT
CGAGCTAATG CTGACCGTTT ATTGTTTGGT AAAGTGAACC CTGATGGTTC AGTTTCAGAC
GAAGACTCAG TTGATGAAGT AGACCAGTAC GAAGTGGGTG TGAAGTATCG TTACGATAAT
ATGTCGGTAT TTGCGACAGC ATTTTACTCT GAAACCGAAG AGCAAAATTT TGAAGCCACG
AGCCAAATAT TCTTTGACCG TAAATATGAA GCCAAAGGGA TTGAGCTAGA AGGTGCTTAC
TACGTTGGCG ATTTCGACTT CCGCGGTAAC GTAACCTGGA CCGATGCTGA AATTGTTAAA
GATGCACTTA ACCCCAGCGT AATTGGCAAC ACTCCTCGTC GCCAAGCAGA TTTTATTTAC
TCACTAATGG GCCGTTATAA CTTTGATAAA GGCTCTGTTG GGGTCAATTT GATTGGTACT
ACTGATTCTT ATGCTCAAGA TAACAATGAC CTAAGTTTTG ATGGTTACAC TCAAGTGAAC
GCGTTTGCGT CGTACCAGCT AACCGATGTG TTATCAGTCG CGCTTAACGT CAATAACTTG
TTTGATACTG TTGGTATTAC CGAAGCCGAA GAAGGTTCGG TGCCCGACAA CAATATTATT
CGTGCCAGAA CCATTAACGG TCGTACAACC AGTGCCACAA TTAAGTACGA GTTTTAA
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| Protein sequence | MIISTSKKFV LSTLAVMVSS SLWAAEADTA ETKKDAIGLE RITVTGVARG TRVMDSSVSV
SSVSPEDLAI SSPRSSAEAF RIIPGMKVES TGGEGNANIA VRGLPVASGG AKFLQIQEDG
LPILQFGDIA FGNADIFLRI DSTTQTIESI RGGSASTAAS NAPGGIINVI SKTGTSDAGS
ISSTVGLDYD TLRTDFEYGT SINDSMRFHI GGFVRTGDGP RDPGYTANKG GQIKANLTKE
FDSGYVRLYV KHLNDKSIGY LPMPMYSDGS SIPGFDAQSD TVHSANMLST LRLDANGNIS
RGDMRDGMNP IVNSVGLEAS FDLGDDWLVE NRFRISDVSG NFMSLMPAEV GNSSSIASSI
GGAGSTLIYA NGAKAGQAFD SDLAMRVHSF DVTMNDFGSI VNDMKLTKTF DDSNVTLGFY
TATQNINMTW MWNSYLMEVQ GDNAALLDVV AADGTSYSDN GLYAYGVPYW GNCCQRNYDS
DYTIKAPYIA ASSKFGDLSL DGSVRYDSGD ASGYYAGNVQ SQVDMNRDGV ISQPELSVSS
IDNANPQLVN YDWGYLSYSL GANYQVSEDL AAFGRISHGG RANADRLLFG KVNPDGSVSD
EDSVDEVDQY EVGVKYRYDN MSVFATAFYS ETEEQNFEAT SQIFFDRKYE AKGIELEGAY
YVGDFDFRGN VTWTDAEIVK DALNPSVIGN TPRRQADFIY SLMGRYNFDK GSVGVNLIGT
TDSYAQDNND LSFDGYTQVN AFASYQLTDV LSVALNVNNL FDTVGITEAE EGSVPDNNII
RARTINGRTT SATIKYEF
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