| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3979 |
|---|
| Symbol | |
|---|
| ID | 4280870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4742718 |
|---|
| End bp | 4743851 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638136800 |
|---|
| Product | ABC-2 type transporter |
|---|
| Protein accession | YP_752643 |
|---|
| Protein GI | 114565129 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.508382 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGA TACTCGCAAT GGTGCGCAAA GAACTCATCG ACGCCGCACG AGATAAACGA
TCTGTTATGG CTGGTTTATA TTATGCCATT GGTACGCCGC TGATTATGTG CGGCATGTTT
ATGGTGTTAA TTGGCCAGCT GTCTAGTCCA GAAGATTTAA ACATCAATAT CAATAATGCC
GATAACGCTC CAGATTTAGT GCGCTACTTA AGTAATAACG GCATTAACCA CGGTGAAGAT
GAACAAGCGA ATAAAATCAT CTTAACCATT AGTGACGATT ACGCCGCCAA CATGGCCAAA
GCTAAACAAG CTGAAGTGAT ATTAATAGCC GACAATTCAG ATGAGAAGCT GCAAAAATCA
ATTCGTCGAC TAGAGCGTCA ACTGCAAGCA TATAGTGCAG AAATGGGCAG CATTCGCTTA
ATTGCACGCG GTATTAATCC CCGGATAACC CAGCCATTAA AGGTCAATAT CGAAGACAAA
GCCACACCAG ACTCTAAAGG TGGGATGATT TTAGGCATCG CTATTTTCAC CATGATGTAC
TCGGTATTTA TTTCCGGTAT GAACCTCGCG ATCGACACCA GTGCGGGTGA GCGTGAGCGT
AACTCACTAG CACTATTGTT AAGCCACCCA ATGAGCACCC GCCAATTGGT CATCGGTAAA
ATTATTGCCG TAACCTGTTT TGCTTTGCTC GGGTTAATCT TGATTTTACT GGTATCAAAA
GTGGCTTACC CCTTTGTACC GTGGCAAGAA ATTGGCTTTA CCATCAACAT TAGCCAAGAC
TTTATGGGCT TAATGTTCTT AGTGGGTATT CCAGTCGCCT TGATGGCCGC AACCTTACAA
CTATATGTAT CGTTTATGGC TAAAACTTTT AAAGAGGCAC AATCATACTT AACCATGGTG
TTATTTGTAC CACTGGCCCT TTCAATGGCA GCTAGTTACA ACATCGCTCC AGACATATTG
CAATGGTTAC CCGTATCAGG CCAACAGCAA GCATTAATGG ACTTTATTAA AGGTCGTGAA
ATACCAATGA TGCAGTTAAT TATTTCATCT GTGACCACAC TGATCATTGC CATTGCGTTG
GCTGCAGGCT TAGAAAAGTC GCTTAAAAGT GAAAAAGTCG TCTTTGGTTT ATAA
|
|---|
| Protein sequence | MKMILAMVRK ELIDAARDKR SVMAGLYYAI GTPLIMCGMF MVLIGQLSSP EDLNININNA
DNAPDLVRYL SNNGINHGED EQANKIILTI SDDYAANMAK AKQAEVILIA DNSDEKLQKS
IRRLERQLQA YSAEMGSIRL IARGINPRIT QPLKVNIEDK ATPDSKGGMI LGIAIFTMMY
SVFISGMNLA IDTSAGERER NSLALLLSHP MSTRQLVIGK IIAVTCFALL GLILILLVSK
VAYPFVPWQE IGFTINISQD FMGLMFLVGI PVALMAATLQ LYVSFMAKTF KEAQSYLTMV
LFVPLALSMA ASYNIAPDIL QWLPVSGQQQ ALMDFIKGRE IPMMQLIISS VTTLIIAIAL
AAGLEKSLKS EKVVFGL
|
|---|
| |