| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3976 |
|---|
| Symbol | |
|---|
| ID | 4280867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4739911 |
|---|
| End bp | 4740288 |
|---|
| Gene Length | 378 bp |
|---|
| Protein Length | 125 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638136797 |
|---|
| Product | transcriptional regulator, GntR family protein |
|---|
| Protein accession | YP_752640 |
|---|
| Protein GI | 114565126 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1725] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAT TAATAAATGT CAACCCCAGC AGTGGTGAAC CCATCTATCG ACAGTTGCAC
GATCAAATCG TGCGCTTAAT TGTCGGCGGG CAATTGCACC CCGAAGATGT TCTGCCTTCG
GTGCGCCAAC TTGCCGAACA TTTAGCGGTA AACCCGATGA CGGTATCACG TGCTATGCAG
CAACTAGTCG ACCAAGGTTG GGTTGAGCGC CGTCGTGGTC AGCCGTCACG CGTGGCTGCC
AGAACCGCGG CCAATAATGA TTCTGGCAGC AGTTTGTTGG CACCACAATT AACTGCATTA
GTTGAGCAGG CACGGCAGCT AGGGGTCGAT TATGACCAGT TACAAGTATT GTTGGAACAA
TTTTGGAATA AAGAATAG
|
|---|
| Protein sequence | MLELINVNPS SGEPIYRQLH DQIVRLIVGG QLHPEDVLPS VRQLAEHLAV NPMTVSRAMQ
QLVDQGWVER RRGQPSRVAA RTAANNDSGS SLLAPQLTAL VEQARQLGVD YDQLQVLLEQ
FWNKE
|
|---|
| |