| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3941 |
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| Symbol | |
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| ID | 4280832 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4701284 |
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| End bp | 4702135 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136762 |
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| Product | rhomboid family protein |
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| Protein accession | YP_752605 |
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| Protein GI | 114565091 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0000502611 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGAAA TCGGCCAATT ACCTAATGCA CGTGCAGCAC AGGCATTTAT TGACTACCTA
AAAGGGTTAA ATATTCAATG CCATGCCGTG ACTCATTCTC AAGGTGTTGG CCTAATAATT
ACTAACCCCG CCGATGAAAA CCAAGCTCGC GCCGAGTTAA TTGAGTTTGC TAAAAACCCA
TACGATAGTA AATACTTGCA AGCCTCTTGG GACAACGGTG CAACGGATAC CAAATTTGAC
TATGGCCCAG GAACTAAAGG CTTAATTCAA CAGTTTATGA CAGGTGCAGG CCCACTGACA
TTAGTGTGCT TTTTTGCTTG TGTTGCCGTT TTCGCGGGCA TGAACCTTGG TTTTGCCGAT
GCCATCTTCA CTAAGTTATC TTTTTTTAGC GCCGTTGCGG ACAGTGATGT AAACCAAGTG
TGGCGGGTAT TCACCCCAAG CTTAATGCAC TTTTCTGCTA TGCATATTAT CTTTAATTTG
CTGTGGTGGT GGTACTTAGG CGGTAAAATT GAAACAAATT TGGGGACTAG ACCGTTACTG
TTTTTATTAG TTGTCGCGGG CACTTTGCCT AATATTGTGC AGTTTTACAT GACAGGACCT
AATTTTGGTG GCTTGTCTGG CGTCGTGTAC GCTGTGGTAG GTTACACTTG GCTAATGGGT
ATTCGTAAAC CTAGCTGCGG TATTAGTTTG CCGCAATCTT ATATGGGATT TATGCTCGTT
TGGTTGGTTC TCGGCTTTAC TGATGTGTTA GGCATGCCAA TTGCGAATGG CGCCCACATT
GCAGGGCTTT GTGTTGGGTT AGCTCAAGCA TTATTTGATA GTAGAACCTC ACCAACAACT
AAAACCAGCT AA
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| Protein sequence | MIEIGQLPNA RAAQAFIDYL KGLNIQCHAV THSQGVGLII TNPADENQAR AELIEFAKNP
YDSKYLQASW DNGATDTKFD YGPGTKGLIQ QFMTGAGPLT LVCFFACVAV FAGMNLGFAD
AIFTKLSFFS AVADSDVNQV WRVFTPSLMH FSAMHIIFNL LWWWYLGGKI ETNLGTRPLL
FLLVVAGTLP NIVQFYMTGP NFGGLSGVVY AVVGYTWLMG IRKPSCGISL PQSYMGFMLV
WLVLGFTDVL GMPIANGAHI AGLCVGLAQA LFDSRTSPTT KTS
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