| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3939 |
|---|
| Symbol | tdh |
|---|
| ID | 4280830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4699828 |
|---|
| End bp | 4700853 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638136760 |
|---|
| Product | L-threonine 3-dehydrogenase |
|---|
| Protein accession | YP_752603 |
|---|
| Protein GI | 114565089 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.27746 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAT TAAGTAAGTT AAAGCCTGAA GAAGGCATCT GGATGGTCGA TGCACCAAAA
CCAGAAATGG GTCACAACGA CCTGCTAATT AAAATTCGTA AAACAGCTAT TTGTGGTACT
GACGTGCATA TCTATAACTG GGACGAATGG TCGCAAAAAA CCATTCCAGT TCCGATGATT
GCCGGTCATG AATATGTCGG TGAAGTAGTC GATGTTGGCC AGGAAGTACG TGGATTTAGT
ATTGGTGATC GTGTATCTGG AGAAGGTCAC ATCACCTGTG GTCACTGCCG TAACTGTCGT
GCTGGCCGTA CCCACTTATG CCGTAATACT TCAGGCGTTG GTGTGAATCG TGACGGTGCG
TTCGCCGAAT ATTTAGTGCT ACCAGCGTTT AACGCCTTTA AAATCCCTGC GGATATTCCA
GATGATTTAG CGGCTATATT CGATCCATTC GGTAATGCAG TACATACTGC ATTGTCGTTT
GATTTAGTCG GTGAAGACGT GTTAATTACC GGTGCAGGCC CTATTGGTAT TATGGCTGCT
GCGGTTTGTA AACACGTTGG GGCTCGTCAT GTTGTAATTA CTGACGTAAA CGAATACCGA
CTTGATCTTG CCCGTAAAAT GGGTGCGACT CGCGCAGTAA ATGTTGCAAC AGAAAACCTT
AAAGATGTCA TGAAAGAACT TGGCATGACA GAAGGCTTTG ACGTCGGTTT AGAAATGTCA
GGCGTACCAT CGGCATTCCA CGCGATGTTA GACACCATGA ACCACGGTGG TAAAATTGCC
ATGCTAGGTA TTCCTGGTGG CGAAATGGCC ATTGATTGGA GCAAAATCAT TTTTAAAGGG
TTGATCATCA AAGGTATTTA TGGCCGTGAA ATGTTCGAAA CTTGGTACAA AATGGCAAGC
TTAATCCAAT CTGGCTTAGA CTTGTCACCC ATCATTACTC ATCACTTTAG TATTGATGAT
TTCCAGAAAG GCTTCGATGC AATGCGTTCA GGTCAGTCAG GTAAAGTTAT ATTGAACTGG
GATTAA
|
|---|
| Protein sequence | MKALSKLKPE EGIWMVDAPK PEMGHNDLLI KIRKTAICGT DVHIYNWDEW SQKTIPVPMI
AGHEYVGEVV DVGQEVRGFS IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNRDGA
FAEYLVLPAF NAFKIPADIP DDLAAIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCKHVGARH VVITDVNEYR LDLARKMGAT RAVNVATENL KDVMKELGMT EGFDVGLEMS
GVPSAFHAML DTMNHGGKIA MLGIPGGEMA IDWSKIIFKG LIIKGIYGRE MFETWYKMAS
LIQSGLDLSP IITHHFSIDD FQKGFDAMRS GQSGKVILNW D
|
|---|
| |