Gene Sfri_3924 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3924 
Symbol 
ID4280815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4684098 
End bp4684913 
Gene Length816 bp 
Protein Length271 aa 
Translation table11 
GC content45% 
IMG OID638136745 
Productformamidopyrimidine-DNA glycosylase 
Protein accessionYP_752588 
Protein GI114565074 
COG category[L] Replication, recombination and repair 
COG ID[COG0266] Formamidopyrimidine-DNA glycosylase 
TIGRFAM ID[TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.132547 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCGAAT TACCAGAAGT TGAAGTGACC CGTCTAGGGA TCAGTCCATA CCTTATTGAG 
CAAACGGTAA GTGAATTGAT TGTGCGCAAT GCCTCACTTC GTTGGCCTGT ACCGGCTATA
GCTCAAAACA TTGTTGGTCA GCGTATTACC AATGTCCGCA GACGAGCTAA ATACTTACTC
ATTGATACCG ATGCAGGAAT GACAATCGTG CATTTAGGCA TGTCAGGCAG CTTACGTATT
TTACCGCGCA ATACCCCAAT CGAAAAACAT GACCATATTG ATTTAGTACT CGAAAATGGG
CGCATGTTAC GTTTTAACGA TCCACGTCGC TTTGGAGCTT GGTTATGGTA TGAGTTACCA
GAAGAAGCCC ATCCACTGCT ATCAAAGCTT GGCCCAGAAC CACTAAGCCC TCATTTTACG
CCATTGCAAT TGCAAGCAGC ACTTGCGGGC AAGAAAAAGG CGATTAAACT GTGCTTAATG
GATAATCACA TCGTGGTTGG AGCCGGTAAT ATTTACGCCA ACGAAGCTTT ATTTGCTGCC
GGGATCCATC CTGAAGCCGC GGCGGGAAGC ATTGATTTAG AACGGTTAAC GATTCTAGTC
AGCGAGGTTA AGCAAATTTT GGCTCACGCC ATTGAACAAG GTGGGACAAC ATTAAAAGAT
TTTACTAATG CCGATGGTAA GCCTGGATAT TTTGCGCAAA AACTACATGT TTATGGTCGT
GGTGGCGAAA CCTGTACAGC CTGTGGCAAT TTATTAAGTG AGATAAAACT TGGCCAACGT
ACCACGGTTT TCTGTGGTTT ATGCCAACAG CGTTAG
 
Protein sequence
MPELPEVEVT RLGISPYLIE QTVSELIVRN ASLRWPVPAI AQNIVGQRIT NVRRRAKYLL 
IDTDAGMTIV HLGMSGSLRI LPRNTPIEKH DHIDLVLENG RMLRFNDPRR FGAWLWYELP
EEAHPLLSKL GPEPLSPHFT PLQLQAALAG KKKAIKLCLM DNHIVVGAGN IYANEALFAA
GIHPEAAAGS IDLERLTILV SEVKQILAHA IEQGGTTLKD FTNADGKPGY FAQKLHVYGR
GGETCTACGN LLSEIKLGQR TTVFCGLCQQ R