Gene Sfri_3916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3916 
Symbol 
ID4280807 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4676157 
End bp4677545 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content44% 
IMG OID638136737 
Producttwo component, sigma54 specific, transcriptional regulator, Fis family protein 
Protein accessionYP_752580 
Protein GI114565066 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000203856 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCCAG ATGAACATAT CTCCCCAGTA AGCAAGACCA CTATGTCGGT TCTTATCGTT 
GATGATGAGC CCGGTATGCG TAGTTTTTTG ATGAAAGCCT TGGCAAAAAA GTTTGCCTTG
GTAGAAACCG CCTCCACAAT TGCCCAAGCA GAAGAATTAC GCAGTCACGG CCATTTCGAT
TTGTTAATTG TTGATATTCG TTTGCCCGAC CGTTCAGGTA TTGAGTGGCA TGAAGCGTTA
GATGATCCCG AACGTCAATC TGATATCATT TTTATGACCG GTTATGCAGA CATGGACGTG
GCAATCAAAG CATTACGTGC AGGTGCCTCT GATTTCATCA TGAAACCGTT TCACTTAGAG
CAAATGATTA CCGCCGTTGA CCGCTGTATC GAAAAACGAC TGCTAAAGCG TGAAAACTTT
ATGTTAAGGC GTGAACTGTC GCACGGACAG TCATCCACCA TTATCGGCAA CAGTGAAGCC
ATCCGTGATG TTAAAGAGGT CATTGAGCGA ATCGCACCGA CTAACGCAGT TGTATTAATT
GAGGGCGAAT CAGGCACAGG TAAAGAGCTG GTGGCCAGAC AATTACATCA ACAGAGTGGC
CGAAGTGGTG CGTTTGTACC AGTAAACTGT GGTGCCATCG CCCCTGAATT GTTAGCAAGT
GAACTGTTCG GCCATACAGC GGGCGCTTTT ACCGGGGCTA AAGGTAATCG TGAAGGGTTA
TTTAGTTATG CCTCGGGCGG CACGATATTT CTGGACGAAA TTGGCGAAAT GCCGATGAAC
ATGCAAACCG CCTTACTCAG AGTGCTCGAA CAACGTGCTA TTCGTCCTGT AGGAAGCGAA
AAAGAAATCG ACATTAATGT GCGCGTTATC GCGGCCACTA ATCGTTTATT AATTGATGAA
GTTGAAGCGG GTCGTTTCAG ACGTGATTTA TTTTATCGTT TGAATGTATT GAACATTGTT
ATTCCATCTT TGCGCTCTCG GCCAGAAGAT GTTGTTGAGC TTACCCATTA TTTTACCTTG
CAGTTGTCAC AAGAGTTGGG CATTAAAGAT GTTATTTGGA GCCACGAAGA CCTACAAGTA
CTGCAACAGC ATGATTGGCC CGGTAATATT CGTGAACTGC GTAATATGAT TGAACGATGC
ATCCTATTAG GTAAACCGCC TGCGGAATAT TGGAAGAAAC CTGTGTCTGT TATGGTTAAT
GATGCGATGG GCTATCCGCT AAGTTGGCCA TTAAAAGAAG TTGAAAAACA ACATGTCACC
AAAGTGGTCG ATAGCCATAG TGGTAATAAA TCTGCTGCAG CGCGAGATTT AGGTGTGTCA
CGAAAAACCT TAGATAGAAA ATTTAAAGAT TGGCTAACTC ACGAAAAACA AGGTCTTGAG
GAAGAATAA
 
Protein sequence
MSPDEHISPV SKTTMSVLIV DDEPGMRSFL MKALAKKFAL VETASTIAQA EELRSHGHFD 
LLIVDIRLPD RSGIEWHEAL DDPERQSDII FMTGYADMDV AIKALRAGAS DFIMKPFHLE
QMITAVDRCI EKRLLKRENF MLRRELSHGQ SSTIIGNSEA IRDVKEVIER IAPTNAVVLI
EGESGTGKEL VARQLHQQSG RSGAFVPVNC GAIAPELLAS ELFGHTAGAF TGAKGNREGL
FSYASGGTIF LDEIGEMPMN MQTALLRVLE QRAIRPVGSE KEIDINVRVI AATNRLLIDE
VEAGRFRRDL FYRLNVLNIV IPSLRSRPED VVELTHYFTL QLSQELGIKD VIWSHEDLQV
LQQHDWPGNI RELRNMIERC ILLGKPPAEY WKKPVSVMVN DAMGYPLSWP LKEVEKQHVT
KVVDSHSGNK SAAARDLGVS RKTLDRKFKD WLTHEKQGLE EE