Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3916 |
Symbol | |
ID | 4280807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4676157 |
End bp | 4677545 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638136737 |
Product | two component, sigma54 specific, transcriptional regulator, Fis family protein |
Protein accession | YP_752580 |
Protein GI | 114565066 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000203856 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCCAG ATGAACATAT CTCCCCAGTA AGCAAGACCA CTATGTCGGT TCTTATCGTT GATGATGAGC CCGGTATGCG TAGTTTTTTG ATGAAAGCCT TGGCAAAAAA GTTTGCCTTG GTAGAAACCG CCTCCACAAT TGCCCAAGCA GAAGAATTAC GCAGTCACGG CCATTTCGAT TTGTTAATTG TTGATATTCG TTTGCCCGAC CGTTCAGGTA TTGAGTGGCA TGAAGCGTTA GATGATCCCG AACGTCAATC TGATATCATT TTTATGACCG GTTATGCAGA CATGGACGTG GCAATCAAAG CATTACGTGC AGGTGCCTCT GATTTCATCA TGAAACCGTT TCACTTAGAG CAAATGATTA CCGCCGTTGA CCGCTGTATC GAAAAACGAC TGCTAAAGCG TGAAAACTTT ATGTTAAGGC GTGAACTGTC GCACGGACAG TCATCCACCA TTATCGGCAA CAGTGAAGCC ATCCGTGATG TTAAAGAGGT CATTGAGCGA ATCGCACCGA CTAACGCAGT TGTATTAATT GAGGGCGAAT CAGGCACAGG TAAAGAGCTG GTGGCCAGAC AATTACATCA ACAGAGTGGC CGAAGTGGTG CGTTTGTACC AGTAAACTGT GGTGCCATCG CCCCTGAATT GTTAGCAAGT GAACTGTTCG GCCATACAGC GGGCGCTTTT ACCGGGGCTA AAGGTAATCG TGAAGGGTTA TTTAGTTATG CCTCGGGCGG CACGATATTT CTGGACGAAA TTGGCGAAAT GCCGATGAAC ATGCAAACCG CCTTACTCAG AGTGCTCGAA CAACGTGCTA TTCGTCCTGT AGGAAGCGAA AAAGAAATCG ACATTAATGT GCGCGTTATC GCGGCCACTA ATCGTTTATT AATTGATGAA GTTGAAGCGG GTCGTTTCAG ACGTGATTTA TTTTATCGTT TGAATGTATT GAACATTGTT ATTCCATCTT TGCGCTCTCG GCCAGAAGAT GTTGTTGAGC TTACCCATTA TTTTACCTTG CAGTTGTCAC AAGAGTTGGG CATTAAAGAT GTTATTTGGA GCCACGAAGA CCTACAAGTA CTGCAACAGC ATGATTGGCC CGGTAATATT CGTGAACTGC GTAATATGAT TGAACGATGC ATCCTATTAG GTAAACCGCC TGCGGAATAT TGGAAGAAAC CTGTGTCTGT TATGGTTAAT GATGCGATGG GCTATCCGCT AAGTTGGCCA TTAAAAGAAG TTGAAAAACA ACATGTCACC AAAGTGGTCG ATAGCCATAG TGGTAATAAA TCTGCTGCAG CGCGAGATTT AGGTGTGTCA CGAAAAACCT TAGATAGAAA ATTTAAAGAT TGGCTAACTC ACGAAAAACA AGGTCTTGAG GAAGAATAA
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Protein sequence | MSPDEHISPV SKTTMSVLIV DDEPGMRSFL MKALAKKFAL VETASTIAQA EELRSHGHFD LLIVDIRLPD RSGIEWHEAL DDPERQSDII FMTGYADMDV AIKALRAGAS DFIMKPFHLE QMITAVDRCI EKRLLKRENF MLRRELSHGQ SSTIIGNSEA IRDVKEVIER IAPTNAVVLI EGESGTGKEL VARQLHQQSG RSGAFVPVNC GAIAPELLAS ELFGHTAGAF TGAKGNREGL FSYASGGTIF LDEIGEMPMN MQTALLRVLE QRAIRPVGSE KEIDINVRVI AATNRLLIDE VEAGRFRRDL FYRLNVLNIV IPSLRSRPED VVELTHYFTL QLSQELGIKD VIWSHEDLQV LQQHDWPGNI RELRNMIERC ILLGKPPAEY WKKPVSVMVN DAMGYPLSWP LKEVEKQHVT KVVDSHSGNK SAAARDLGVS RKTLDRKFKD WLTHEKQGLE EE
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