| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3863 |
|---|
| Symbol | |
|---|
| ID | 4280754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4615355 |
|---|
| End bp | 4616503 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638136684 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_752527 |
|---|
| Protein GI | 114565013 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACAAAG CATTGAAAGT CGCCGCAGTT ATTTCTGCTG CATTATGGAT TACCGCTTGT
GGTCAAGGGG ATGAAAATGC CCAGTCACAG CAACCGCGAC CACCTACACC CGTTGGCGTG
ATGACAGTTG AAGCAATTTC GCAAGCGATT AAGGTTGAAT TACCTGGTCG CAGTCGTGCC
TTTTTAGAAG CCGAAGTGCG TCCACAAGTG TCAGGTATTA TCACTAAGCG TGCCTTTACC
GAAGGCACCG AAGTTAAACA AGGTCAATCT CTATATCAAA TTGATGCAGC CACTTATAAA
GCGGCATTAG TGAGTGCAGA AGCCGATCTT GCTAGCGCAA ATGCTGGTTT AGCCTCAGCA
AAAGCCAAGG CGGCGCGTTA TGCCAAATTA GTCAAAACCA ATGCAGTTAG TAAGCAAGAT
TTTGACGAGA CGGAAGCGTT ATTTAAAGAA GCGCAAGCTT CAGTAACGGT AGCAAAAGCC
GCCATTAATA CTGCGACCAT CAACACCGAA TATACTGAAG TTAAAGCACC GATTTCTGGT
CGTATTGGTA AGTCATCTGT TACTGCTGGC GCGTTAGTTA CCGCTAATCA AAGTAATACC
TTAGCGACAA TTCAACAGCT CGATCCAATT AATATCGACA TCGTTCAGTC AAGTGCACAA
TTATTGCGTT TAAAAGCCAA TTTACGTTCA GGCCAGTTAC TGAAAAGTGA CAATGCTAAA
GTGACCTTAT TGCTTGAAGA CGGCAGCACA TATGATCAGC AAGGTACATT ACAATTTGCT
GAAGTTAATG TAGATGAAAC TACTGGTTCC GTGACGTTAC GTGCCGAGTT CCCTAATCCT
GACGGTATAT TATTACCTGG TATGTATGTG CGTGCGCTAT TAAATGCTGG CCAAGACCCA
CAGGCTATTT TAGTGCCTCA ACGTGCTATT ACCCGTAATA GCAAAGGCCA AGCGGTTGCA
ATGATAGTAA ACCAAGACAG TAATGTTGAA ATGCGCGTGG TACAAACCGC TGAAGTGATT
GGTCATCAAT GGCGCATTGT CGATGGTTTG TCTGTTGGCG ATAAATTAAT TGTCGAAGGA
TTACAAAAAA TCCGCCCTGG TGCACCAGTA TCTGCACAGG TGTTAACGGC TGATCAACCA
CAAAAGTAG
|
|---|
| Protein sequence | MHKALKVAAV ISAALWITAC GQGDENAQSQ QPRPPTPVGV MTVEAISQAI KVELPGRSRA
FLEAEVRPQV SGIITKRAFT EGTEVKQGQS LYQIDAATYK AALVSAEADL ASANAGLASA
KAKAARYAKL VKTNAVSKQD FDETEALFKE AQASVTVAKA AINTATINTE YTEVKAPISG
RIGKSSVTAG ALVTANQSNT LATIQQLDPI NIDIVQSSAQ LLRLKANLRS GQLLKSDNAK
VTLLLEDGST YDQQGTLQFA EVNVDETTGS VTLRAEFPNP DGILLPGMYV RALLNAGQDP
QAILVPQRAI TRNSKGQAVA MIVNQDSNVE MRVVQTAEVI GHQWRIVDGL SVGDKLIVEG
LQKIRPGAPV SAQVLTADQP QK
|
|---|
| |