| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3860 |
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| Symbol | |
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| ID | 4280751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4610238 |
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| End bp | 4611227 |
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| Gene Length | 990 bp |
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| Protein Length | 329 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136681 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_752524 |
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| Protein GI | 114565010 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATGGC GTAATCGGCA GACGCTATTA GGTATCGCTA CGTTGTTGGC TTGTATTTGT
GTACCTATAC AAGCCAAGCA AGTGGTTTAT CCTGCCGTGG AAGACGTTGA AAAGCCGCAA
ATTAAAGCTA AGTATATTCC TCAGCAAGCC GCAGCAAAAA AGCAGTTATC GTTACAGCAA
TCTCAAACTA CCACCGCTGA AAATCACCCA GCGCCAACGA TAGAAACATA TAACGTGTTG
AGTCGCCGCA ACACTAAGCC TGCCGATGAG CAATCAATTA ATGATCAGCT GTCGTTGAAT
GCTGGCTATG TGGGCGATAA ACAAAAACCG CGTACGTTAA CCAATAATTA TTCGTTAACA
AAAACGGGCT CAGTATCGAG TAAGCCTCGC GTTAAGGCCA GTTACTCCGA AAATGGTATT
GTCAGTGATT TAGGCGTGGA AAAGCGTAAA GTGTTTCAAT ACAAGCAAAC CAATGGGGTG
ATGGTGTTTA GCGATCAACA ACCGCTGGAT GCAGACTACC AAGTATTATT GTATGAATGT
TTTGCATGCC GGGTCGATTC GGTTATCGAT TGGTATAAAA TCCCATTATT TACCTCACAT
TTTGCAACCG ATGTGGCTTT AGCCGCGCGG CAGTATCAGC TTGATCCTGC ACTTATTCGA
GCAGTGATCC ATGCCGAGTC AGCGTTTAAA ATTGGCGCGT TATCCAAAGC TGGCGCTAAA
GGCTTAATGC AATTAATGCC AGGTACCGCT AGCGATATGG ACGTTGATGA TCCTTTTAAT
GCTCAACAGA ATATTCGTGG TGGCAGTCGT TATCTTGCGC AATTATTGAG CAAATTTGAC
GGCGACATTG ACCTTGCTTG TGCGGCATAC AATGCTGGTC CAACAACGGT GATGCAATAC
CGCGGTATAC CGCCCTATCC TGAAACACAA GCTTATGTGA AGCGCGTAAA AATATTATTA
AAACGCTACC AAAAAGCATT AGCCAGTTAA
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| Protein sequence | MTWRNRQTLL GIATLLACIC VPIQAKQVVY PAVEDVEKPQ IKAKYIPQQA AAKKQLSLQQ
SQTTTAENHP APTIETYNVL SRRNTKPADE QSINDQLSLN AGYVGDKQKP RTLTNNYSLT
KTGSVSSKPR VKASYSENGI VSDLGVEKRK VFQYKQTNGV MVFSDQQPLD ADYQVLLYEC
FACRVDSVID WYKIPLFTSH FATDVALAAR QYQLDPALIR AVIHAESAFK IGALSKAGAK
GLMQLMPGTA SDMDVDDPFN AQQNIRGGSR YLAQLLSKFD GDIDLACAAY NAGPTTVMQY
RGIPPYPETQ AYVKRVKILL KRYQKALAS
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