| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3851 |
|---|
| Symbol | |
|---|
| ID | 4280742 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4598671 |
|---|
| End bp | 4600806 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638136672 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_752515 |
|---|
| Protein GI | 114565001 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAACTG AAAAATCCAG ATTCACTTTA ACCACCATAG CAATAGCCAT TGCAGCAAGT
TTTGCTAGCT CGGCGGCAGT TGCTGACGAC AAAAGTCAGA CAGAAGCCAA ACCTGAAATC
ATTGTGGTGA CAGGGAGCTT ATTAGGTAAT TCTGAAGTTG CTGATTTAAA AACGTATACC
GGTAACCGCT CAATCATTAC TTCAGATCAA ATAGAGCGTA CTGCAGCCAG ATCAATCGAC
ACTGCATTAC AACAAGTTCC TGGGATTAAA ATTAAAGACG AGACTGGAAC TGGGGTTTTA
CCTAACATAT CAGTACGAGG CTTAGACAGC AGCCGCAGTG GTTACGCCCA AGTCTTACTC
GATGGGATCC CAATGACGCT TGCGCCATAT GGGCACACTG GCCAGTCATT ATTCCCTGCC
ACGTTATTCA TGATAGATAG AATCGATGTA GCACGTGGCG GAGCATCGAT TCAGTATGGT
CCTAACAACG TTGGCGGCGT AATCAACCTT ATTTCAAAGC CAATCCCAAC CGACTGGGAA
ACCAGCGTTA ATGAGCGCAT GACCTTCTTT GGCGACAGTA ATACATTATT TGATACCAAC
ATCAGCACTG GTGGCGCGGT TAATGAAGAT TTTTCAATGC GTTTTGATGG CAACATCACC
AAAGGGGAGT CGTTTCGTGA ACACTCCGAC ACTGACATTA AAAACCTAAT GTTAAAGACC
CTGTGGAATA TCGATGAGCA AAACAGCTTA GATGCCACGC TGCAATATTA CGATGCTTTT
TCTGAGCTAC CGGGTGCATT AAATACTCCC GCTTATGAAG CCGATCGCGA GCAATCCCTA
CGCCCTAATG ATGAGTTTAA TGCCGATACT AAACGAGTGT CATTGAAATA TAGCCATGTT
CTCGACGACT CTAAAATTAT CGATTATGGT GAGATTGATC TCAGAGTATT TGGTAATAAA
AGTTCACGTA ACTTTCAGTG GGATTTTTAT GATTCAAGCA AAGACACCGA TGGCAATTTA
GGCACAAGCT GGAGCGATAC CACCCAGGAT GCTACTCATC TGCGTAACTC TCCGCGAGAC
TTTACCGTGT TTGGCATTGA GCCAACGGCA AGCCTGCTTA TTGATGGCGA TATTAGTCAG
CACATTATCG CAGGTGCTCG TTATATTAAT GAAGACATTA GCTACCAACT CAACCACATA
GACAAGTCGA CTCAAACGGC AACTCGTCCG CGTGACTGGC AAATGGATAC CAATGCCATG
GCCTATTATG TGAGTAATAA AGTGGGATTC TTTGACGACA CATTGTCGGT TACTCCTGGC
ATAAGATATG AAGATGTCCG CATGACCTTC ACCAATGTTG GACAAGACTA TAGCCAAGAT
AATCACGTGA CCGAGTGGCT TCCCGGCATC ACCTTGGGTT ATGAGTTCAG TTCAAACTGG
TTTGGGTATA CCAATGCTCA ACGTTCATTG AGAACACCAC AAATTTCGCA ATTATGGCCT
AAAGATCAAA CCCTTGAATC AGAGCTATCT TGGAACTATG AAGCTGGGGT ACGTTTTACC
CCAACAGAGC GCAGTAACTT AAGTATTGCC GCTTATCGTA TCGATTTTGA AAATAAAGTC
GAATACGACA GAAACGTCAG TATGTTCGTC AATATTGGCC AAACTCGTAA CCAAGGTATT
GAGCTAGAAG GCACTTACTC ACCTATGTCG CTGCCAGATC TGGTTCTAAC CGGCGCTTAC
AACTATTTAG ATACCGAACA ACTTGATGGC GAGTTTGCAG GTAACGAATT GGCTTATGTG
TCTAAGCATC AACTTTCTGC CAGTGCTTTA TATAGCATTA AAGATGTCGA TTTAGGATTA
ATGGCGTTCT ATTACAGCAA GTCATTCGCT GATCTTGCTA ATAGTGTTGA AGAAGATGTA
TCAGGCACAT CGGGTGAAGT GCCTGCGTAT ACCGTGGTTA ATTTCAATAT TGCGACTGAG
TTTTTCAAGC AAGATAATCA CGGCTTAAAG GTGGGATTGT CGGTCAACAA CCTATTTGAT
AACGAGTACT ACTTTAGAGG CTTAGATGTG TCTCCAGCAG GACGAGTGCC AGCATCAGGC
CGCTCACTGA GCTTAGATGT CGGTTACACC TTCTAA
|
|---|
| Protein sequence | MLTEKSRFTL TTIAIAIAAS FASSAAVADD KSQTEAKPEI IVVTGSLLGN SEVADLKTYT
GNRSIITSDQ IERTAARSID TALQQVPGIK IKDETGTGVL PNISVRGLDS SRSGYAQVLL
DGIPMTLAPY GHTGQSLFPA TLFMIDRIDV ARGGASIQYG PNNVGGVINL ISKPIPTDWE
TSVNERMTFF GDSNTLFDTN ISTGGAVNED FSMRFDGNIT KGESFREHSD TDIKNLMLKT
LWNIDEQNSL DATLQYYDAF SELPGALNTP AYEADREQSL RPNDEFNADT KRVSLKYSHV
LDDSKIIDYG EIDLRVFGNK SSRNFQWDFY DSSKDTDGNL GTSWSDTTQD ATHLRNSPRD
FTVFGIEPTA SLLIDGDISQ HIIAGARYIN EDISYQLNHI DKSTQTATRP RDWQMDTNAM
AYYVSNKVGF FDDTLSVTPG IRYEDVRMTF TNVGQDYSQD NHVTEWLPGI TLGYEFSSNW
FGYTNAQRSL RTPQISQLWP KDQTLESELS WNYEAGVRFT PTERSNLSIA AYRIDFENKV
EYDRNVSMFV NIGQTRNQGI ELEGTYSPMS LPDLVLTGAY NYLDTEQLDG EFAGNELAYV
SKHQLSASAL YSIKDVDLGL MAFYYSKSFA DLANSVEEDV SGTSGEVPAY TVVNFNIATE
FFKQDNHGLK VGLSVNNLFD NEYYFRGLDV SPAGRVPASG RSLSLDVGYT F
|
|---|
| |