Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3820 |
Symbol | |
ID | 4280711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4555534 |
End bp | 4557102 |
Gene Length | 1569 bp |
Protein Length | 522 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638136641 |
Product | 2-isopropylmalate synthase |
Protein accession | YP_752484 |
Protein GI | 114564970 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCAATA GAGTCATAAT TTTTGATACT ACCTTACGTG ATGGTGAGCA AGCATTAGCA GCCAGTTTAA CCGTTAAAGA AAAGCTACAA ATTGCCCTAG CACTTGAGCG TTTAGGCGTG GATGTCATGG AAGTTGGGTT TCCTGTTTCT TCTCCGGGCG ATTTTAAATC GGTGCAGACG ATTGCTAAAA CCATTAAAAA CAGCCGTGTG TGTGCGCTAT CTCGTGCACT TGAAAAAGAC ATTGATGCTG CAGCCCAAGC TTTGTCGGTA GCCGATCAGT TTCGAATTCA TACCTTTATT TCTACCTCGA CCATTCACGT TGAAAGTAAA TTAAAGCGCT CTTTTGATGA TGTATTAGAA ATGGCCGTTA ATGCGGTTAA ATACGCCAGA CGATTTACGG ACGATGTTGA GTTTTCATGT GAAGATGCTG GTCGTACACC AATAGACAAT TTGTGTCGTA TGGTTGAAGA GGCCATTAAA GCTGGTGCTC GTACCATTAA TATTCCTGAT ACCGTTGGTT ATACAGTACC AAGTGAGTTT GGTGGGATTA TTCAAACCTT ATTTAATCGA GTTCCGAATA TCGATCAAGC AGTGATCTCG GTTCATTGTC ATGACGATTT AGGTCTGTCG GTCGCTAATT CCATCGCAGC AGTTGAAATG GGCGCGCGCC AAGTTGAATG TACTATTAAT GGTATTGGTG AACGTGCCGG TAACTGCTCG TTAGAAGAAA TCGCCATGAT CCTTGCTACC CGTAAAGGTT TGCTTGATTT GGATTGTGGA ATTAACGCCA AAGAAATCCA CCGCACCTCA TCGCTAGTCA GCCAGTTATG TAACATGCCG ATCCAAGCTA ATAAGGCGAT TGTGGGTACC AATGCATTTT CTCATTCGTC AGGCATTCAC CAAGACGGTA TGCTTAAAGC AAAAAATACT TACGAGATTA TGACACCGGA AAGTATTGGC TTAAACCGTA ATAACTTGAA CATGACTTCA CGCTCTGGTC GCCATGTGAT TAAACACCGC ATGGAAGAAA TGGGCTACAA ACCAACTGAC TATGACATGG ACAGCCTTTA CGAGCAGTTT TTAACCCTAG CGGATAAGAA AGGCCAAGTG TTCGATTACG ATTTAGAAGC ATTGGTATTT ATGGAGTCGC AAGCGCAAGA CGACGATAAG TACCAGCTTC AGCACATGAT GGTGCATTCA GATTCGACTG AAGGTGTAGC GACTGCCACG GTACGTATTG CTGTAGATGG TAAAGATATT ACTGAGGCTG CCACAGGAAA TGGTCCTGTG GATGCGGCAT ATAATGCCAT TGCTCGAGCA ACAGATCGCA AAATCAATAT TACTAATTAC AAGTTGAGTG CAAAAGGCGA AGGTCAAAAT GCGCTTGGAC AAGTTGATAT TACCGCAAAA TATAATGAAC AAATGTTCCA CGGCGTAGGC TTAGCAACAG ACGTCGTTGA AGCATCAGCT CAAGCGTTAG TGCATGTGAT GAACTTAGTG TACCGCGCAG ATAAAGTGGC TGACTTTAAA CAACAGATCC ATAAAGAAAG GGAGTTAGGT GGCGTATGA
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Protein sequence | MSNRVIIFDT TLRDGEQALA ASLTVKEKLQ IALALERLGV DVMEVGFPVS SPGDFKSVQT IAKTIKNSRV CALSRALEKD IDAAAQALSV ADQFRIHTFI STSTIHVESK LKRSFDDVLE MAVNAVKYAR RFTDDVEFSC EDAGRTPIDN LCRMVEEAIK AGARTINIPD TVGYTVPSEF GGIIQTLFNR VPNIDQAVIS VHCHDDLGLS VANSIAAVEM GARQVECTIN GIGERAGNCS LEEIAMILAT RKGLLDLDCG INAKEIHRTS SLVSQLCNMP IQANKAIVGT NAFSHSSGIH QDGMLKAKNT YEIMTPESIG LNRNNLNMTS RSGRHVIKHR MEEMGYKPTD YDMDSLYEQF LTLADKKGQV FDYDLEALVF MESQAQDDDK YQLQHMMVHS DSTEGVATAT VRIAVDGKDI TEAATGNGPV DAAYNAIARA TDRKINITNY KLSAKGEGQN ALGQVDITAK YNEQMFHGVG LATDVVEASA QALVHVMNLV YRADKVADFK QQIHKERELG GV
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