| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3808 |
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| Symbol | |
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| ID | 4280699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4541036 |
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| End bp | 4542424 |
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| Gene Length | 1389 bp |
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| Protein Length | 462 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136629 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_752472 |
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| Protein GI | 114564958 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAGCG TCACTATGTC GGTATTAGCT CAGCATCTTA ATGGCACCTT ACATGGCCAA
GATGGCGTAA TTACTAGTGT TAGTACTGAC AGTCGTAACA TTCCGGCTCA ATGTTTATTT
ATTGCGTTAA AAGGCGAGCG TTTTGATGGC CATGATTTTG TCGATACAGC GATTAAAAAT
GGTGCAGTAG CACTGTTGGT CGATCATCTA TTAGTCGACC ATCCTTTTGC CGCCGATATT
GCGCAAATTG TAGTGGTCGA TACCCAAAAG GCCATGGGCA AGATGGGCGC GTTTGTGCGC
CAAACAGTGG CGCCTATTTG CGTCGCGTTA ACGGGGTCAA ACGGCAAAAC CAGCGTTAAA
GAAATGCTGG CCACTATTTT ATCTCAACAT CACCAAGTGT TATTTACCGC AGGCAATTTT
AACAACGAAA TTGGTGTGCC GTTAACTTTG CTACGGTTAA GTGAAGGTGA TGAATATGGG
GTGTTTGAAC TTGGCGCAAA CCATCGTGGA GAGATCGATT ACACCTCATC ATTAGTGCTG
CCTCAAGTCG CGTTAGTTAA TAATGTTGGC AATGCTCATC TTGAAGGATT TGGTTCACTG
GAAGGTGTTG CTCAGGCTAA ATCTGAAATT TTTAATCATC TGACACCAGA TGGAACCGCA
ATTATTAATG CTGACGATAA GTTTGCAGAC TTTATGCTGC AACAGTCACA GGGGCGCAAA
CATCTGCGTT TTAGCCGTGA AATGAATGTC GATGCAGATG TGACCGCAAC AGACATAGTG
GCAGATGCCA ATGGTTGTTA TCGATTTACA TTAACTTTTG ATGGACAGCA AGAAGTGGTG
CAATTGCCAT TAGCGGGTCT GCATCAAGTG AGCAATGCTC TGGCTGCGGC ATCTATGTGT
ATTGCCTTGG ACATATCGCT TTACGACATC GCACAAGGCT TTGCATTGCT CAAACCTGTA
AAGGGTCGTA TGCAGCCCCA TGATCTTGGC CGAGTGTTAT TAATTGATGA TAGTTATAAC
GCTAATCCAA CGTCAGTAAG TGCGGCGATT AATTGGTTGC AACAACGTGA TGGATATCGT
TGTTTAGTGC TGGGAGATTT AGGCGAATTA GGCGACAATG CTGCCCCTTT GCACGCCAGC
ATTGGATTGC AGGTTAAAAA TGCAGCGATA GAGTCGCTAT TTTGTTGCGG CCAATTGTCG
GCAAATACCA GTGAAGCATT TGGCAGCGAA CACTTTTGTG CTCAAGAGCC ATTAATAGTG
GCATTGCAAA AACAGTTAGC AAGTACCACA GGTAATATTA CAGTTTTAGT TAAAGGTTCC
CGCAGCGCCG CTATGGAGCG AGTTGTGGAC AGTTTATTAG ATGCCTATGG GCGTGGGGAG
TTAGTGTAG
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| Protein sequence | MISVTMSVLA QHLNGTLHGQ DGVITSVSTD SRNIPAQCLF IALKGERFDG HDFVDTAIKN
GAVALLVDHL LVDHPFAADI AQIVVVDTQK AMGKMGAFVR QTVAPICVAL TGSNGKTSVK
EMLATILSQH HQVLFTAGNF NNEIGVPLTL LRLSEGDEYG VFELGANHRG EIDYTSSLVL
PQVALVNNVG NAHLEGFGSL EGVAQAKSEI FNHLTPDGTA IINADDKFAD FMLQQSQGRK
HLRFSREMNV DADVTATDIV ADANGCYRFT LTFDGQQEVV QLPLAGLHQV SNALAAASMC
IALDISLYDI AQGFALLKPV KGRMQPHDLG RVLLIDDSYN ANPTSVSAAI NWLQQRDGYR
CLVLGDLGEL GDNAAPLHAS IGLQVKNAAI ESLFCCGQLS ANTSEAFGSE HFCAQEPLIV
ALQKQLASTT GNITVLVKGS RSAAMERVVD SLLDAYGRGE LV
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