| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3785 |
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| Symbol | |
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| ID | 4280678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4507106 |
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| End bp | 4508032 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136598 |
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| Product | prepilin peptidase |
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| Protein accession | YP_752451 |
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| Protein GI | 114564937 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAT CTATCTCAAA CTTTATTACA ACAATGACTC AATACCCTTG GGTCTTTGTT
GCGATTAGCT TTATTTTTGC GGCCACCATT GGCAGCTTTC TCAACGTCGT GATCCACCGT
TTACCGGTGA TGATGAAACG TGAATGGCAA AGCGAATGTA ACTTTTATCT CAATGAATAT
CATCCTGACA TTGTAAAACA AGTAGGCACT GAGCGTTTAC AGAAAGCCAT CGATCCCTTT
CCTGAAAAAT ACAATCTAGT AGTACCAGGT TCCGCCTGCC CTAAATGCAA GGCCAATATA
AAGCCTTGGC ATAATCTGCC AATATTAGGT TGGCTGATGC TTAAGGGTAA ATGTGCCGAT
TGCAAAACCG GTATTTCAAG CCGCTATCCC ATTATTGAAC TCTTAACCGG CGTATTAATT
GCCGCATTAG CATGGCATTT TGGCCCAACA TGGCAATTTG TTTATGCCAG CATTCTAACG
TTTGTGTTAG TGGCGTTAAC TGGCATCGAT TTAGATGAAA TGCTATTACC GGACCAACTC
ACGTTACCAA TTCTTTGGTT AGGATTAATC ATTAACCTTA AAGGTATTTA TACCAGCCCT
GAAGACGCGA TTATCGGCGC AGCTGCAGGG TATTTAAGTT TGTGGTCGGT ATTCTGGTTA
TTTAAATTAG TCACTGGCAA AGAAGGCATG GGCTACGGTG ACTTTAAACT ATTAGCCGTT
TTTGGTGCCT GGTTAGGCTG GCAAATGTTA CCACTAATTA TTCTATTATC TTCACTGGTA
GGCGCGGTAG TGGGCATTAC CATGATTATG GCTAAACAGC TCAACAAAGG TAACCCTATC
CCCTTTGGTC CTTATATTGC TGCAGCAGGC TGGATAGCGT TAGTATGGGG ACATGACATT
CTCAATTGGT ATCTTAGTAC GTTATGA
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| Protein sequence | MTESISNFIT TMTQYPWVFV AISFIFAATI GSFLNVVIHR LPVMMKREWQ SECNFYLNEY
HPDIVKQVGT ERLQKAIDPF PEKYNLVVPG SACPKCKANI KPWHNLPILG WLMLKGKCAD
CKTGISSRYP IIELLTGVLI AALAWHFGPT WQFVYASILT FVLVALTGID LDEMLLPDQL
TLPILWLGLI INLKGIYTSP EDAIIGAAAG YLSLWSVFWL FKLVTGKEGM GYGDFKLLAV
FGAWLGWQML PLIILLSSLV GAVVGITMIM AKQLNKGNPI PFGPYIAAAG WIALVWGHDI
LNWYLSTL
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