| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3783 |
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| Symbol | |
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| ID | 4280676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 4504003 |
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| End bp | 4505709 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638136596 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_752449 |
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| Protein GI | 114564935 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.458272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCAG CTGCCGTTCA TTTAGGACTA TCAACTTTAT TTATCCGTAA AGGCCTCCTA
AACGAAGAGC AAATATCAAC TTCCATTTCC GAATCTCGAA AGCACAAACA ATCCTTAGTC
ACGACATTAG TAAACTCCAA GTTCCTTTCT GCTCGCGAAA TAGCTGAACT GTGCTATGAA
GAGTATGGCA CCCCATTACT TGATTTAAAT GAATTTGATG TAACTGGTAT CGCAGATGAG
CTACTCAATA AAAAGCTCAT AGAGAAACAT AAATGCTTAC CTCTCTTCAA GCGTGGTAAT
CGTCTTTACA TCGCCACATC AGATCCAACC AATATTGCTG CTCTTGAGGA TTTTCAATTT
AGTCTAGGTC TCCATGCCGA AGCTATTTTG GTTGAAGATG ACAAATTGCT AAAAGCGCTA
GAAAAAATCA TCGAAGATGA TATCTCTGGT TTGGACTTAG CTGGCGCAGA TGAAGAAGCC
TTAGCCAATA TGGAAGTGGC TGATACAGAA AGACGTGACG AACCAAGCGG AGATAGCAGT
GACGATGCAC CTATTGTAAT CTATATTAAT AAAATTCTCA CCGATGCTAT TCGTAAAGGC
GCCTCTGATT TACATTTTGA GCCTTACGAA AAACGCTATC GTATCCGCTT TCGAATTGAT
GGTATCTTGC ATGAAGTATC TGAACCACCA GTCAATCTAT CCAACCGTAT TTCAGCCCGC
TTAAAAGTGA TGTCGAAACT CGATATTGCT GAGCGTCGAG TTCCGCAAGA TGGCCGCATT
AAAATGAAGC TGTCGCGCAC CAAATCAATC GATTTCCGTG TCAGTAGCTT GCCGACCATT
TGGGGCGAGA AGATCGTGAT GCGTATTTTG GATTCATCTT CCGCTCAGTT GGGGATTGAA
AAGCTCGGTT ATGAAGATGA TCAACGCTTA TTATACGAAG AAATGCTCGC TAAACCTCAA
GGGATGATAT TAGTCACTGG CCCTACGGGT TCAGGTAAAA CAGTCTCCTT GTATACTGGC
CTCAATATTC TTAATACCGA AGAGCGTAAT ATATCTACCG CAGAAGATCC GGTCGAAATT
AACCTCGAAG GCGTTAACCA AGTACACATT AATTTAAAAG CTGGCCTAAC TTTCGCTTCA
GCGCTACGAT CATTTTTACG TCAAGATCCT GATGTGGTGA TGGTTGGTGA AATCCGCGAT
TTAGAAACTG CAGAGATCGC CATTAAAGCC GCCCAAACGG GTCACTTAGT GTTATCAACA
TTACATACCA ATTCAGCCGC CGAAACCTTA ACCCGTTTAA TCAATATGGG TGTGCCAGGT
TATAACATTG CTAGCTCAGT CAATTTAATT ATAGCCCAAC GACTTGCCAG GCGCCTATGC
CCAGCATGTA AACATGAAGA AGAAATTCCT GTTGCTGAGA TGCAGCGCTT AGGCTTCAGT
GAAGCTAATA TCGCCAAAGG TTTTACCGTA TTCAAACCAA TTGGTTGTGA GCTATGCTCA
GGTGGTTATA AAGGCCGAGT GGGTATATAC GAAGTGATGA AAATGAGCGA TGAAATAGCG
CGTACAATTA TGGAAGGCGG TAACTCACTC CAAATTGCCA CCCTTGCCAA GCAGCAAGGT
ATGCGCGATT TACGTCAATC AGGATTGCTC AAAGTCATTC ACGGCGTGAC TAGCATCGCG
GAAATTAACC GTGTAACCAG CTTTTAA
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| Protein sequence | MSSAAVHLGL STLFIRKGLL NEEQISTSIS ESRKHKQSLV TTLVNSKFLS AREIAELCYE
EYGTPLLDLN EFDVTGIADE LLNKKLIEKH KCLPLFKRGN RLYIATSDPT NIAALEDFQF
SLGLHAEAIL VEDDKLLKAL EKIIEDDISG LDLAGADEEA LANMEVADTE RRDEPSGDSS
DDAPIVIYIN KILTDAIRKG ASDLHFEPYE KRYRIRFRID GILHEVSEPP VNLSNRISAR
LKVMSKLDIA ERRVPQDGRI KMKLSRTKSI DFRVSSLPTI WGEKIVMRIL DSSSAQLGIE
KLGYEDDQRL LYEEMLAKPQ GMILVTGPTG SGKTVSLYTG LNILNTEERN ISTAEDPVEI
NLEGVNQVHI NLKAGLTFAS ALRSFLRQDP DVVMVGEIRD LETAEIAIKA AQTGHLVLST
LHTNSAAETL TRLINMGVPG YNIASSVNLI IAQRLARRLC PACKHEEEIP VAEMQRLGFS
EANIAKGFTV FKPIGCELCS GGYKGRVGIY EVMKMSDEIA RTIMEGGNSL QIATLAKQQG
MRDLRQSGLL KVIHGVTSIA EINRVTSF
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