| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3773 |
|---|
| Symbol | |
|---|
| ID | 4280666 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4484950 |
|---|
| End bp | 4487214 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136586 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_752439 |
|---|
| Protein GI | 114564925 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAAA TTTTGCGCCT TAACTTATCT ACCTGGTTTT TGGCTAGCTG TATTTGCTTT
AGCCTAGCAG TGCAACCTGT CTATGCTGCG AAAAAAGCCG CTAAAGAAAG ACCCACTATT
GGCTTAGTGC TGAGTGGCGG TGGGGCAAAA GGTGCTGCAC ATATTGGTGT GTTGAAAGTA
CTTGAAAAAT ATCATATTCC GGTCGATTAC ATTGCGGGTA CCAGTATTGG CGCTTACGTT
GCTGGTATGT ACGCGTTAGG CTATAACGCC GACCAAATTG AAGAAATCAT GCTCAGTGGT
GAATGGTCTA AAGGCTACTC AGACACTATT CCGCGCGATA AATTAAGCTA CCGCGATAAA
CAGCAACGTG ATCAGTTTAA TATTCCACTG ACCGTGGGTT ATAACAATAA TAGCTTAACT
TCACCTAGTG GTTTGTTACG TGGCCAAAGC ATGTCTCAAT TATTGCGCCA CTCGACAGGT
TTAGTTGAAC AGTTTGGTGA CTTTGATGAA CTCGCGATTC CGTACCGAGC GGTGGCGACG
GATTTAGCAA CCAGTGAAGC TGTAGTGTTA TCCAGCGGCA GTGTAGTACA AGCCATGCAA
GCATCTGCCA CAGTACCAGG AGCATTGCAG CCAGCACTGA TTAACGGTCG TTTACTGGTT
GATGGCGGAA TTGCCAATAA TATGCCTATC GATGTGGTGA AAGCGATGGG GGCAGATATT
ATCATTGCCG TCGATATTGG TTCAGCACTG ACCAAACAAG AAAACTTAGA CAGTACTATT
GCCGTACTAG AGCAGCTCTC AACCATTTTA ACTCAAGCGA GCACCGCCCG CCAAAAGACC
TTACTGACGA CTGGTGATAT TCTCATTCGT CCCGCCATTG ATAGCCTAAG TACCACTGAT
TTTTCAATCA TGCCATTAGC GCTTAAATTA GGTGAAGATG CCGCTATATT AGAGTTGGTG
AAGCTAGAAC CGCTTGGTAT TGGTGAGCAA GACTATTTGG CTTATCAAGC GGATAAATTA
CAACAAAGCT TAATGTGGAT CGATCCACTT AAAAAACCCA TCTATAAAAT TGCTTTTGAT
AATCAATCAA AAGTCAGCGA AAAATTACTG CGCGATCGTT TAGGGATTAC CGAAGGCGTT
GTACTAACCA AAGAAGAGTT AAATTTAGCC TTAAACCGAG TGTATTCATT GAATAAATTC
GAGCGTGTCG ATGCTGAGTT TGAAGATGTT GAGCAAGGCC GAATTTTAAC CATTACCACC
CGAGCAAAAT CATGGGGGCC GAATTACTTT CAAGCAGGCT TTAACTGGGA AGATGACTTC
ACCTTAGATT CAGCTATTAC GTTAAGCTTG GCTTACACCA TGACCGACTT AACCGAAAAT
GGTGGTGAGT GGCGTAATGA ATTAGAACTT GGGTATAAAA AGTTAGTCGG CACTGAGTTT
TATCAACCAT TAGATCGTGA TCAAACATTT TATAGCCTAG CGCGATTCCA GTATGAAATG
AAAGATTGGG ATTTAATTGA TCAAGATAGC CGTTATGTAG AACTCGAAAA TAATGTCGCT
CAAATCGTTT TAGGTATCGG CTATAACTTT AATTCAGATG GAATTATCGA ATTAGGCTTT
GTCGGCGAAG ATGGTCGGGT TAGCAGTGAA TTTGGCTCGG TTGATTCACT AGATTATCAT
TCAACGGGTG GCTATTTTAA AGTGGCCTAC GACAGCCTAA ACAGCATTAG CTTCCCGACT
GAAGGTAATC GAATTACCTT TGTCAGCTAC TTAAGAGACG AATCCTACAA TGGATTAAGC
AATGTCGATA CGACCTTTAG TGATGATCTT GCTTGGCAAT TTGAAGCGGA TTGGAAGGGT
GCGTTGAAAC TCGGAAATCA CGCCATTGTA GGTAAGGTGG AGCTGGCGAC CGTAGAGAAT
GACGGTAACT TTACCTTGCA TGTGGCAGAT TTAGGCGGTT TCTTGAACTT GTCGGGTTTC
CGTAAAGACA CCTTAATTGG TGCACATAAA GTGTTTGGGG CAGTGATTTA TCAATACGAT
CTCGGCCGTG ATGTATTGAT CACCGACTTG CCTTTGTATT TAGGCACCAG TCTTGAAGCT
GGTAATGTGT GGTTTGATCG TGATGATGTC GATTTAGATG ATTTAATTTA TGCCGGTAGT
TTCTATCTCG GAACCGACAC CGATTGGGGC CCTGCAGCAT TAGGTTTTGG TTTTACCGAC
CGCGGTGAAA CAGCATTTTA CTTATTTGTT GGTAAAAACT TTTAG
|
|---|
| Protein sequence | MQQILRLNLS TWFLASCICF SLAVQPVYAA KKAAKERPTI GLVLSGGGAK GAAHIGVLKV
LEKYHIPVDY IAGTSIGAYV AGMYALGYNA DQIEEIMLSG EWSKGYSDTI PRDKLSYRDK
QQRDQFNIPL TVGYNNNSLT SPSGLLRGQS MSQLLRHSTG LVEQFGDFDE LAIPYRAVAT
DLATSEAVVL SSGSVVQAMQ ASATVPGALQ PALINGRLLV DGGIANNMPI DVVKAMGADI
IIAVDIGSAL TKQENLDSTI AVLEQLSTIL TQASTARQKT LLTTGDILIR PAIDSLSTTD
FSIMPLALKL GEDAAILELV KLEPLGIGEQ DYLAYQADKL QQSLMWIDPL KKPIYKIAFD
NQSKVSEKLL RDRLGITEGV VLTKEELNLA LNRVYSLNKF ERVDAEFEDV EQGRILTITT
RAKSWGPNYF QAGFNWEDDF TLDSAITLSL AYTMTDLTEN GGEWRNELEL GYKKLVGTEF
YQPLDRDQTF YSLARFQYEM KDWDLIDQDS RYVELENNVA QIVLGIGYNF NSDGIIELGF
VGEDGRVSSE FGSVDSLDYH STGGYFKVAY DSLNSISFPT EGNRITFVSY LRDESYNGLS
NVDTTFSDDL AWQFEADWKG ALKLGNHAIV GKVELATVEN DGNFTLHVAD LGGFLNLSGF
RKDTLIGAHK VFGAVIYQYD LGRDVLITDL PLYLGTSLEA GNVWFDRDDV DLDDLIYAGS
FYLGTDTDWG PAALGFGFTD RGETAFYLFV GKNF
|
|---|
| |