| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3748 |
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| Symbol | |
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| ID | 4280641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4454500 |
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| End bp | 4456260 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136561 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_752414 |
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| Protein GI | 114564900 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.307926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCCTA AGTTAAAGAT GCGGTTAGGA GATCTTCTTG TTCAAGAGCT GATTATTACT
GACACCCAAT TACAGCAAGC ATTGGCGGAA CAGCGCAATT CAGGTAAAAA GCTCGGCCGC
ACCTTAATTG ATTTGAAGAG TATTACAGAA GACCAGTTAC TTAAGTTTTT ATCTCAACAA
CTTAATTTAC CGTACCTCGA TATTAGTCGT CGTCCGATAG CCGCTGAAGT GGTGAATATA
CTCCCCGAAG TACAAGCGAG GCGCTATCGA GCATTAGTGG TGGAAAGTAA TTCCGACCAT
GTGTTAGTTG CTATGAGCGA CCCTGCCGAT TTGCAGGCTA TCGATAATAT TGAAGTGTTA
GTTGCCCCTA AACAGTTGAT GATTGCGGTG GCGCCAGAGC AACAATTACT CGATGCGTTT
GATAACCTTT ATCGCCGTAC TGGGCAAATC GCTGAGATTG CCGGCAAGCT TGATGAAGAA
TATGCCGCAG ATGACATGTT CGATTTGGCT AATTTGACTC AAAGCGACAG TGATAATGAA
ACCACGGTGG TGAAGTTATT GCAGTCAATT TTTGAAGATG CGGTGCAAAT GCGTGCGTCA
GATATTCACA TTGAACCTGG TGAGAAAGTG CTGCGGATCC GTCAGCGTAT TGATGGCCAA
TTACATGAAA ACCTCCTCAG TGAAGTTAAT ATTGCTTCTG CTTTAGTGTT ACGACTTAAG
TTAATGGCAG GACTGGATAT TTCAGAAAAA CGTATGCCAC AAGATGGCCG TTTTCATATG
GAAATAAAAG GTCATAAAAT CGACGTGCGA ATGTCGACCA TGCCGATTTA TCATGGTGAG
TCTGTGGTGA TGCGTTTATT GGATCAAACC ACAGGTTTAC GTACGTTAGA TGAAACCGGT
ATGCCACCGC ATATTGTGGC ACGTATTCGT AAACAGATTA AACGCCCTCA CGGTATGTTG
TTAGTCACAG GGCCAACAGG TAGTGGTAAA ACGACTACCC TGTACGGTAT TTTAAGTGAG
CTTAACACTG CCGATAGAAA GATTATCACT GTAGAAGATC CGGTTGAGTA TCAATTACCG
CGAATTAACC AAGTGCAAGT CAATCACAAG ATTGGTTTAG ACTTTTCTAA CGTATTGCGT
ACAACACTTC GTCAAGATCC CGACATTATC ATGGTGGGAG AGATGCGTGA CCAAGAGACC
GTGGAAATTG GCTTACGAGG TGCGTTGACG GGTCACTTTG TATTATCGAC TTTGCACACT
AATGATGCGG TTACCAGTGC GTTGCGATTA CTTGATATGG GTGCGGCAAG TTATTTGGTC
GCTAGTGCGC TGCGGGTCAT TATCGCTCAA CGTCTTGTTA GGCGCGTTTG CCACAATTGT
GCCGTGGATT ATCAACCAAC AGCAGCTGAA CGCAGTTGGC TTGTAAGTGT GACGAAAAGA
GATATTAGCA GCGCCACCTT TAAAGTGGGG AGTGGTTGTC AAACCTGTAA TGGTTCTGGT
TATCGCGGTC GAATTGGTAT TTTCGAAATA CTTGAACTTG ACGAAAATAT GATAGATGCC
ATGCGAACAG GTAATCCGCA AGATTTTGCC CGTGCAGCAC TGCGCAGTCC TAACTTTATT
CCCCTCGCGC ATTCTGCGAT GGAGTATCTA TTCCTTGGCA CGACAACACT CGAAGAAGTG
TCAAAACTGG TTGAAGATGT CAGTGAATCA AAAGTGCCTT TATCGAAAGA TATCGTTAGC
CAACAAGATA TTGGGTTATA A
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| Protein sequence | MKPKLKMRLG DLLVQELIIT DTQLQQALAE QRNSGKKLGR TLIDLKSITE DQLLKFLSQQ
LNLPYLDISR RPIAAEVVNI LPEVQARRYR ALVVESNSDH VLVAMSDPAD LQAIDNIEVL
VAPKQLMIAV APEQQLLDAF DNLYRRTGQI AEIAGKLDEE YAADDMFDLA NLTQSDSDNE
TTVVKLLQSI FEDAVQMRAS DIHIEPGEKV LRIRQRIDGQ LHENLLSEVN IASALVLRLK
LMAGLDISEK RMPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQT TGLRTLDETG
MPPHIVARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP
RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT
NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC AVDYQPTAAE RSWLVSVTKR
DISSATFKVG SGCQTCNGSG YRGRIGIFEI LELDENMIDA MRTGNPQDFA RAALRSPNFI
PLAHSAMEYL FLGTTTLEEV SKLVEDVSES KVPLSKDIVS QQDIGL
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