Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3729 |
Symbol | |
ID | 4280622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4430054 |
End bp | 4431043 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638136542 |
Product | secretion protein HlyD family protein |
Protein accession | YP_752395 |
Protein GI | 114564881 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGGCTA ACAAGATCAT CGCGGTGGTC GCATTCGTGC TGCTTATATT ATTGTTAGGA TACGGCGTAA AGCTGGCTTT TACGCCTCAA CCGACAGTGT TACAAGGGCA AATCGAAGCT CGTGAATATA ATATCTCGTC TAAAGTTCCG GGGCGAGTTG AGCAAGTTTT AGTTCGCAAA GGCGATCAAG TCGATGTGGA TGATATTTTG TTTGCTATCA GCAGCCCAGA ATTAGATGCC AAGCTACTAC AGGCTCAAGG CGGTCTTGAA GCTGCAACCG CTATGCAACA ACAAGCTAAT AACGGTGCAA GGCAGCAACA AGTTACCGCG GCTAAAGAGC AATGGTTAAA AGCGAAAGCT GCGACCGAAC TTGGCCTAAA AACGTATCAA CGAATTGAAA ACTTATTTGA TGAAGGTGTT GTTGCACGGC AAAAGCGCGA TGAAGCTTAT ACCCAATGGC AAGCCGCTAA ATATAACGAG CAAGCAGCTT ATGCTATGTA TCAAATGACT AATGAAGGCG CCCGGGTTGA AACTAAAGCC GCAGCAGCAG GTAAAACTCG TATGGCAGAA GGCGCGGTTA ACGAGGTGAA TGCCATTTTA GCCGACAGCC AAATGCGCTC ACCTAAAAAA GCTGAGGTGA GTGAAGTATT ATTACAAGCT GGTGAGCTTG CGCCGAGTGG TTTTCCGGTG GTGAGCATTA TTGATATGAG TGATGCGTGG GCTGTGTTGC AAGTTCGAGA AGATCAATTG TTGCAATTTA AGCAAGATCA AACCGTCATG TTAGATATTC CAGCATTACA GCAGCAAGTC GAATTTACCG TGTCACACGT GAGTGTCATG GGTAACTTTG CTACTTGGCG CTCGACCGAG AGCGGCCACG ACTTTGATAT GCGTACCTTC GAAGTTGAAC TGACACCTAA GCAAAAGATT GTCGATTTAC GAGTTGGTAT GTCGGTGTTG TTTCGTGCCG ATAAGCTTGC CGAACATTAA
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Protein sequence | MRANKIIAVV AFVLLILLLG YGVKLAFTPQ PTVLQGQIEA REYNISSKVP GRVEQVLVRK GDQVDVDDIL FAISSPELDA KLLQAQGGLE AATAMQQQAN NGARQQQVTA AKEQWLKAKA ATELGLKTYQ RIENLFDEGV VARQKRDEAY TQWQAAKYNE QAAYAMYQMT NEGARVETKA AAAGKTRMAE GAVNEVNAIL ADSQMRSPKK AEVSEVLLQA GELAPSGFPV VSIIDMSDAW AVLQVREDQL LQFKQDQTVM LDIPALQQQV EFTVSHVSVM GNFATWRSTE SGHDFDMRTF EVELTPKQKI VDLRVGMSVL FRADKLAEH
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