| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3721 |
|---|
| Symbol | |
|---|
| ID | 4280614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 4420099 |
|---|
| End bp | 4421478 |
|---|
| Gene Length | 1380 bp |
|---|
| Protein Length | 459 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638136534 |
|---|
| Product | peptidase U62, modulator of DNA gyrase |
|---|
| Protein accession | YP_752387 |
|---|
| Protein GI | 114564873 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000190523 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTTCTC ATCCTTCTTC AGCGCCTCGC GCAACTGAAC CAACACCTAG AATTGATTCT
GAATTATCGG CGTTAAAAGA CGCTGTATCT GTCGCATTAG AATATGCGAA AGAGTTAGGC
ACTTCGGCCG CTGAAGTGGC TATCAGTAAG CAGCAAGGTT TGTCGGTTTC AACCCGTGAA
AAAGAAGTTG AAACCGTTGA GTTTAATAAA GACGGTGCGT TAGGCATTAC CATTTACCGT
GATGGTCGCA AAGGCAGCTC ATCAACCTCA GACTTAAGCC CAGAGGCGAT TCGCCAAGCG
GTAAAAGCGG CTGATGGTAT TGCAAAATAT ACTTCAGAAG ATCCTTTCAG CGGTTTGGCT
GATCCCGCTT TGATGGCGCA AGATATTCGC GACTTAGAGT TATATCATCC ACAAGATATC
GATGCAGAAG AGCTCGCTCA GTTGGCTATT CGTGCTGAAG AAGCCAGTTT GTCGGTTGAT
AGCCGTATCC GTAATTCAGA TGGTGCGAGT GCCAATGCCC ATACTGCCGC CAGAGTTTAT
GGTAATAGCC ATGGGTTTCT TAACGGCTAT TGCAGCTCTC GCTACAGTTT AAGTTGTGTG
GTCATAGGCG AAGAGTCTGA TGGCAATATG CAGCGCGACT ATGACTATAC CGTTGCCCGT
AAATATCATG ATTTACTGTC ACCTGAAGCG GTAGGTTTAC AAGCGGCAAA CAAAACCTTA
AGTCGATTGG ATGCCCGTAA AATTGCGACT GCAAAAATGC CAGTGTTGTT TGCGCCAGAA
ATTGCCACTG GCTTAATGGG GCATTTAATC GGCGCAATTA GTGGCAGCAG TATTTATCGT
AAGTCGAGCT TCTTAATGGA AGCATTGAAT ACTCAAATAT TCCCAGACTG GTTTAGTATT
GAAGAACAAC CGCATTTAAT TGGTGCTCTG GCCAGTGCTA ATTACGACAG TGAAGGTGTC
GCTACCCAAG ATCGTCGTAT TATTGATCGT GGCCAGCTAG AAACTTACTT ATTAACCAGT
TATTCGGCGC GTAAATTATC GATGACCAAC ACGGGTCATG CTGGTGGCAT TTATAACTGG
ACCCTAAGTC ATTCAAACCA AACATTTGAT GACTTGGTTA AAGCCATGAA TACCGGCTTA
ATTGTTACGG AAGTTATGGG CCAGGGCGTT AATGGTGTTA CTGGTGATTA TTCTCGTGGC
GCAGCAGGTT TTTATGTTGA AAATGGTGAA GTGTTGTATC CAGTAGAAGA AATTACTATC
GCGGGTAATT TAAAAGACAT GTTTATGGGA ATACAAGGCG TAGGTAAAGA TCGCGATTTA
CGTTCATCAA TCCGCACTGG TGGTATTTTA CTGAGCGAGA TGAAAATCGC GGGTAATTAA
|
|---|
| Protein sequence | MASHPSSAPR ATEPTPRIDS ELSALKDAVS VALEYAKELG TSAAEVAISK QQGLSVSTRE
KEVETVEFNK DGALGITIYR DGRKGSSSTS DLSPEAIRQA VKAADGIAKY TSEDPFSGLA
DPALMAQDIR DLELYHPQDI DAEELAQLAI RAEEASLSVD SRIRNSDGAS ANAHTAARVY
GNSHGFLNGY CSSRYSLSCV VIGEESDGNM QRDYDYTVAR KYHDLLSPEA VGLQAANKTL
SRLDARKIAT AKMPVLFAPE IATGLMGHLI GAISGSSIYR KSSFLMEALN TQIFPDWFSI
EEQPHLIGAL ASANYDSEGV ATQDRRIIDR GQLETYLLTS YSARKLSMTN TGHAGGIYNW
TLSHSNQTFD DLVKAMNTGL IVTEVMGQGV NGVTGDYSRG AAGFYVENGE VLYPVEEITI
AGNLKDMFMG IQGVGKDRDL RSSIRTGGIL LSEMKIAGN
|
|---|
| |