Gene Sfri_3570 details

Gene Information

• Locus tag: Sfri_3570
• ID: 4280463
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 4240308
• End bp: 4242284
• Gene Length: 1977 bp
• Protein Length: 658 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 638136382
• Product: radical SAM domain-containing protein
• Protein accession: YP_752236
• Protein GI: 114564722
• COG category: [C] Energy production and conversion
• COG ID: [COG1032] Fe-S oxidoreductase

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.370781
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGACCTC ATTTTTATCC GCTTTTACGA TCAAGGCAGG CTATGACCGT TCTTCTAATG 
ACTCCACCGA TGACCCAGCT GAATACACCG TATCCAGCAA CAGCGTATTT AACCGGTTTT 
TTACGCTCAC GAGGCTATGA GGCGGTTCAG CGAGATCCTG CGATTGAGCT TTTTCTTGAG 
ATGATGACAG CACCTGCGCT GGACATTATT CGTCAGCACG TAGAAGAAAA CTTCGAACAC 
TTTGAAGACG ACGAACTGCC AGATGTCATT TTTAACTTTC TGGCTGAATT TGAGCGTTAT 
CACCTAACTG TGGAGCCTGC CATTCGCTTT TTACAGGGCA AAGACCCAAG CCTTGCAATG 
CGGATTAATA CCCGACGTTT TTTACCCGAA GGCCCAGCGT TTGATGCAAT TGCTGAGATG 
GAAGCGGTAT CTGGCGACGT GTTGCAAGCA GCCTTTGGTA ATTTAGGCGT ACAAGATAAA 
GCCAAATATC TGGCCACCCT GTTTATTAAT GATCTGTCGA ACGTTATTAC CCAAGGTGTT 
GATCCCTACT TTGAAGTCAG CCGTTATGGC GAAAAGCTAG CGGCGGCCAA CCCAAGCTTT 
GACAACCTCT ACGACACCTT AATGGGTGAA GCAAGTTTTA GCTCTGAAAT TTTGGAGCAA 
TTGGTCGAGA TGTATCTGGA AGACACCCAA CCAAGTGTCG TCGCATTAAC CGTGCCGTTT 
CCCGGTAATA TGCTAGGCGC TTTACGTATT GCCCAAACCT GTAAAGCCAT TAATCCAGAC 
ATTCCTATCG TCATGGGTGG CGGCTTTGTG AATACTGAAC TGCGCGCACT AAAAGATCCG 
CGCGTATTTG AATTTGTCGA CTTTATCTGT CTGGATGACG GCGAACGCCC GCTTATCACT 
TTGCTGGAAT ACTTTGAAGG CAAACGTGAA ATAGACGATT TAGTGCGTAC TTACTTCCTT 
GCAGAAGATG AAAATGGCCA ACCTTATGTC CACTTAAATC AAAATGATCA GCTGCACGAT 
ATTCCACAAT CTGAGGTCGG CGCACCCGTT TACGACGGTC TGCCATTGGG CGACTACCTG 
TCTTTATGTG AAATGCTCAA CCCAATGCAC CGCATTTGGA GTGACGGACG TTGGAACAAA 
CTGACCATCG CCCACGGCTG TTACTGGCGT AAATGCAGCT TCTGCGACGT CAGTTTGGAC 
TATATCGACC GCTACGATAC CGCTGGCGCC GATGCCTTGG TTGACCGTAT CGTAGAGCTT 
GTTGAAGAAA CCGGACAAAC AGGTTTCCAT TTTGTCGATG AAGCCTTACC GCCAAAAACA 
TTGTTTGCCT TTGCAAAACG TCTCATAGAA CGCGGCGTAG TGATCAGTTG GTGGGGCAAT 
ATTCGTTTTG AACGTACTTT TAGCCCAGCG CGTTGCCAAT TACTGGCAGA CTCAGGTTGT 
ATCGCAGTCA GCGGCGGACT TGAAGTGGCG TCAGATCGAC TACTTAAACT GATGAAAAAA 
GGCGTGAGTG TTGAGCGCGT CGCCCACGTC ACCAAAGCAT TCAGTGATGC CGGAATATTG 
GTTCACGCTT ACTTGATGTA TGGCTTCCCG ACACAAACCG AACAAGAAAC CATAGACTCG 
CTAGAAATGG TGCGTCAGAT GATGGAACAA GGTTGTTTCC AGTCAGCCTA TTGGCATCGT 
TTTGTCGCCA CCATTCACAG CCCGATAGGC ATGAATCCAG AGCAATTTGG TATCACCCTT 
GCTGAACGCC CTGAAATTTT ATTTGCTGAA AACGATGTCG ACTTCACCGA CCCGACCGGA 
ACAGATCATG AAATGCTTGG CGAAGGACTG CGTAAAGCAA TCTACAACTA CATGCACGGT 
ATCGGTTTTG ATCAACCAAT GAGTTTCTGG TTCAACGAAC CCGTTACCCG CACTTCAATG 
AAGAAAGACC TAATATCAAA AGCGATTAGC AACTTTATTC TTAGTAATGA AGAGTAG 

 

Protein sequence

MRPHFYPLLR SRQAMTVLLM TPPMTQLNTP YPATAYLTGF LRSRGYEAVQ RDPAIELFLE 
MMTAPALDII RQHVEENFEH FEDDELPDVI FNFLAEFERY HLTVEPAIRF LQGKDPSLAM 
RINTRRFLPE GPAFDAIAEM EAVSGDVLQA AFGNLGVQDK AKYLATLFIN DLSNVITQGV 
DPYFEVSRYG EKLAAANPSF DNLYDTLMGE ASFSSEILEQ LVEMYLEDTQ PSVVALTVPF 
PGNMLGALRI AQTCKAINPD IPIVMGGGFV NTELRALKDP RVFEFVDFIC LDDGERPLIT 
LLEYFEGKRE IDDLVRTYFL AEDENGQPYV HLNQNDQLHD IPQSEVGAPV YDGLPLGDYL 
SLCEMLNPMH RIWSDGRWNK LTIAHGCYWR KCSFCDVSLD YIDRYDTAGA DALVDRIVEL 
VEETGQTGFH FVDEALPPKT LFAFAKRLIE RGVVISWWGN IRFERTFSPA RCQLLADSGC 
IAVSGGLEVA SDRLLKLMKK GVSVERVAHV TKAFSDAGIL VHAYLMYGFP TQTEQETIDS 
LEMVRQMMEQ GCFQSAYWHR FVATIHSPIG MNPEQFGITL AERPEILFAE NDVDFTDPTG 
TDHEMLGEGL RKAIYNYMHG IGFDQPMSFW FNEPVTRTSM KKDLISKAIS NFILSNEE