| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3566 |
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| Symbol | |
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| ID | 4280459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4235780 |
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| End bp | 4236733 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136378 |
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| Product | TRAP transporter solute receptor, TAXI family protein |
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| Protein accession | YP_752232 |
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| Protein GI | 114564718 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.28304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTAA CCAAACGTTT TTGCATGATT GGCGCGGCTG CAGCGCTATC TATTAGTACG
GCTGTTATGG CCGCGCCGAC ATTTATCAAT ATTCTCACCG GTGGCACCAG TGGCGTTTAC
TATCCTATCG GTGTGGCTTT ATCTCAACTT TACAGCAATG GCATTGAGGG ATCTAAAACC
TCTGTTCAAG CGACTAAAGC GTCGGTTGAA AACCTCAATT TACTACAAGC TGGGCGTGGT
GAATTAGCGC TTGCTCTAGG TGATTCAGTA TCGGCAGCGT GGGAAGGTGA TCAGGAAGCC
GGTTTTAAAG CGCCGCTTAA AAAATTACGT GTTATTGCAG CAACATATTC TAACTATATT
CAGATTGTCG CCAATAAAGA TGCTGGTATT AATAGTCTTG CAGATTTAAA AGGTAAACGT
ATTTCTGTTG GGGCGCCAAA ATCAGGTACT GAACTTAACG CGCGTGCTAT ATTTGCAGCA
GCAGGACTCA GTTACGACGA TATGGGTAAA GTGGAGTTTT TGCCTTATGC CGAATCTGTT
GAGCTGATTA AAAACCGCCA ATTGGATGCG ACTTTACAAT CGTCTGGTTT AGGTATGGCA
GCCATTCGTG ATTTAGCCGC AACAATGGAT ATCAACTTTG TGGCTATCCC TGCAGATGTT
GTCGCTAAAA TTAATAATCC TGCTTATCAA GTTGGGGTGA TTACGGCTAA TACTTATGAA
GGCCAAACAG AAGATGTGAG TACTGTTGCG ATACAAAACT TATTGGTAAG TCACAGCAAG
GTGTCTGATG AGATTGCTTA TCAAATGACT AAGCTGATGT TTGAAAACCT AGACCGTTTA
GGTACTGCTC ACTCAGCTGC GAAGGCGATC AGTTTAGCCA CAGCGGCAAA AGATCTGCCT
ATCCCACTAC ACCCAGGTGC AGAACGCTAT TACAAAGAAG TGAATGCGCT ATAA
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| Protein sequence | MKLTKRFCMI GAAAALSIST AVMAAPTFIN ILTGGTSGVY YPIGVALSQL YSNGIEGSKT
SVQATKASVE NLNLLQAGRG ELALALGDSV SAAWEGDQEA GFKAPLKKLR VIAATYSNYI
QIVANKDAGI NSLADLKGKR ISVGAPKSGT ELNARAIFAA AGLSYDDMGK VEFLPYAESV
ELIKNRQLDA TLQSSGLGMA AIRDLAATMD INFVAIPADV VAKINNPAYQ VGVITANTYE
GQTEDVSTVA IQNLLVSHSK VSDEIAYQMT KLMFENLDRL GTAHSAAKAI SLATAAKDLP
IPLHPGAERY YKEVNAL
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