Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3539 |
Symbol | |
ID | 4280432 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4208596 |
End bp | 4209705 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638136351 |
Product | ABC-2 type transporter |
Protein accession | YP_752205 |
Protein GI | 114564691 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | [TIGR00025] ABC transporter efflux protein, DrrB family |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGAACA GTATTCGCCA TAGCTACATG CGTATTCATG CCATTACCGC TAAAGAAGTT AAGCAGCTTA TGCGCGATCG AATTACCTTT GCCATGGTGA TAATGATCCC GCTGATCCAG CTGTTGTTAT TCGGCTATGC CATCAATACT GATGTGCGGG CAATACCAGT AGCAATTGTT GATCAAAGTG ATTCAGCTGC AGGACGCTGG ATAGTCGAAG CGGTAAAAGT CACCCAGGTA GTGGAAGTCA CATCCTATCT CACGACAGCA GAGCAAGCAC AGGCTGCTAT TCGCCGTGGT GACATTAAAG CGGCATTAAT TTTACCGCCT ACTTTGAATG AAAAAATCGC ACGCAATGAA CCGATTGGCC AATGGATAGT CGATGGTTCA GACACCATGA TTGCAGGCGC GATAAAGCAA CTGCGCAACC TATCGCTCAA CGATATTGTA CCGGAGCAAA CCAGCAACCA ATCTCGGTTT GAAGTTAGCT TATTTTATAA TCCGGAGCAG CGATCCGCGG TGAATATTGT TCCAGGTTTA ATCGCCGTCA TTCTGACCAT GACCATGGTG CTGTTTACTT CATCAGCTAT TGTTCGTGAG CGTGAACGCG GCAACCTTGA ATTATTGATC ACCACCCCAA TAAAGCCAAT AGAACTGATG ATTGGAAAAA TATTGCCATA CATCGTCATC GGCTTAGTGC AAATGACCAT TATTTTAGGC TTAGGCAATA TTATTTTTGC CGTGCCCATC AATGGCGCTA TCAGTCATTT ATTGTTGGGC ACGTTACTGT TTATTACCGC TAGCCTGACA TTAGGGTTAA TCATATCTAC TATTGCAAAA ACACAGCTAC AAGCCATGCA AATGACCATT TTTGTATTAT TGCCAACCAT ATTACTCTCT GGATTTATCA CCCCATTAGA AGCCATGCCG ACAGCAGCAA AATGGATTGC CGAAGCACTG CCAGGAACCC ATTTTATGCG GGTGATCCGA GCGATTGTGT TAAAAGGGGC AACGTTAGGC GAGTTAATAA ACGATGTATT GTGGCTGGTG GGTTTTACAG TCATTGGATT ATGGATTGCA GCGATGCGAT TTAGCAAACG ATTAGATTAA
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Protein sequence | MLNSIRHSYM RIHAITAKEV KQLMRDRITF AMVIMIPLIQ LLLFGYAINT DVRAIPVAIV DQSDSAAGRW IVEAVKVTQV VEVTSYLTTA EQAQAAIRRG DIKAALILPP TLNEKIARNE PIGQWIVDGS DTMIAGAIKQ LRNLSLNDIV PEQTSNQSRF EVSLFYNPEQ RSAVNIVPGL IAVILTMTMV LFTSSAIVRE RERGNLELLI TTPIKPIELM IGKILPYIVI GLVQMTIILG LGNIIFAVPI NGAISHLLLG TLLFITASLT LGLIISTIAK TQLQAMQMTI FVLLPTILLS GFITPLEAMP TAAKWIAEAL PGTHFMRVIR AIVLKGATLG ELINDVLWLV GFTVIGLWIA AMRFSKRLD
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