Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3521 |
Symbol | |
ID | 4280415 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4192069 |
End bp | 4193712 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638136334 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_752188 |
Protein GI | 114564674 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTACGGA TTTTACTAAC GTTATTATTA TTCACATCGG CAGTGTTTAC GACACTATCT CTTCGTGCAG AACAAGATGC TGTGATACCG ATTGTTGCCA CTAGTCAGCT AACTGATACT CAAAATCAAA TCAGCCGTTT ACAACAAACA ATCGAGCAAG ATACCAAGCT ACTATTTAAG GCAAAAGGTG AACTGCGTAC ATTTACTGAA TATCGCATTA AAAACAAGTC GTCTGAATTA CGCGACAAAA TTGGTCAACT TATTGCCACA CCAGACGCAG ACCAGCAATA TCTAGTCACC TTAGTACAAA GCCAATTGGC CTTTTTAGAG AATGTCAGTG CGTACTTAGA CGCCCAAATT ATGACCATGC GTCTTGATTT AAGTCTAGAT GATGACAGTC AAAAAATCCT AGCCATTTCA CAACGAGAAT TTGAACGCGA CCATTATCTC AAGGCACAAT TAACCACTCT GCAGTGGGCA GAAACACTGA ATATAGATGT GAGTGTCCAA AAGCAAAAAT TGACCGAGTT TATGCTCAAT AGAGCGGATC AGTTTGATAG TTTAGTGCAT TACACACAAG ATGAATTACA AAAAGCCGTT GCAGAAGCCG CTGATGCAGG TGCAGATATC ACCAGCGAAC AAAAAGCTGA TGTGGTGGCA CTAAAAGAAC GCTTGGAGCA AAGCAGCTCT AGCTTAGCGG TTTCAGCGGG AATACTCGAA ACATTAGGCC AGAACGTGGC ACCATTTAAA CAAACATTGT TTAGTGTTTC TGGTGATATC ACCCAAGATG TATTGAATTT TAGCGTCGCG TCTAACCTGC TACAAGGTTG GGGTAAAGTC ATTAAAGATC AGACGATTAA TAATGGACCC AGTTTAACCT TTAAGATTTT AGTGTTTCTA TTCATATTAT TTGCGGCAAG TTTAGTCGCC AAAATTGTTA CACAAATTAT CTCTAAAACA GTACGTGCAT CGAAATTACA ATTTAGCCAA CTGTTGCAAG ACTTCTTTAT CTCGTTGTCG AGTAAAATAG TGTTTGCCCT AGGATTATTG ATTGCCTTAT CACAGCTCGG GTTTGAGCTT GGGCCGTTAC TCGCGGGTTT TGGTATTGCG GGAGTCATTA TTGGTTTTGC ACTGCAAGAT ACCCTGTCTA ACTTCGCTTC TGGCATGATG ATCTTAATCT ATCGTCCATT TGATGTCGGC GACTTAATCA ATGCCGCTAA TGTTACCGGT CGCGTCAGCC ATATGAGCCT AGTATCAACA ACAATCAAAA CGCTAGATAA CCAACGTCTT ATTGTTCCAA ACAATAAAAT CTGGGGCGAT ACCATTAACA ACATCACCGC AGAGCATCAG CGTCGAGTAG ACATGACTTT TGGCATTAGC TACAGCGACA ATGTTGAACA TGCAGAAACC ATATTAAAAA GTATTGTAGA ACAACACCCT AAGGTGCAAG CGCATCCAGA ACCGATAGTG AAACTCCACA CATTGGGCGA ATCGTCAGTC GACTTTATTG TAAGGCCTTG GGTTAAACCC GATGATTACT GGGAAGTATA CTGGGACATT ACTCGCGCAG TGAAAATACG CTTTGATGCG GAAGGCATTA GTATTCCGTT CCCGCAACGC GATGTACACA TATATCAAAA GTAA
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Protein sequence | MLRILLTLLL FTSAVFTTLS LRAEQDAVIP IVATSQLTDT QNQISRLQQT IEQDTKLLFK AKGELRTFTE YRIKNKSSEL RDKIGQLIAT PDADQQYLVT LVQSQLAFLE NVSAYLDAQI MTMRLDLSLD DDSQKILAIS QREFERDHYL KAQLTTLQWA ETLNIDVSVQ KQKLTEFMLN RADQFDSLVH YTQDELQKAV AEAADAGADI TSEQKADVVA LKERLEQSSS SLAVSAGILE TLGQNVAPFK QTLFSVSGDI TQDVLNFSVA SNLLQGWGKV IKDQTINNGP SLTFKILVFL FILFAASLVA KIVTQIISKT VRASKLQFSQ LLQDFFISLS SKIVFALGLL IALSQLGFEL GPLLAGFGIA GVIIGFALQD TLSNFASGMM ILIYRPFDVG DLINAANVTG RVSHMSLVST TIKTLDNQRL IVPNNKIWGD TINNITAEHQ RRVDMTFGIS YSDNVEHAET ILKSIVEQHP KVQAHPEPIV KLHTLGESSV DFIVRPWVKP DDYWEVYWDI TRAVKIRFDA EGISIPFPQR DVHIYQK
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