Gene Sfri_3516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3516 
Symbol 
ID4280410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4188797 
End bp4189663 
Gene Length867 bp 
Protein Length288 aa 
Translation table11 
GC content45% 
IMG OID638136329 
Productperiplasmic solute binding protein 
Protein accessionYP_752183 
Protein GI114564669 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.996617 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGCTGC TGTTTACCGC GACAGCTAAA GCGGAACTGA ACGTGTTTGC ATGTGAACCT 
GAATATGCCG CATTAGCGCA AACTTTAGCA CCCGATGCTA GAGTGTATTC GGCCACCACA
GCGATGCAAG ATCCACATCA AGTACAAGCA AGACCAAGCT TGATTGCTAA AATGCGCCAA
GCTGATTTAG TTGTGTGCGC CGGGGCCGAT TTAGAAATTG GTTGGTTGCC AATGTTACAA
ATGAAGTCTG CTAATCCTCA GGTTAATTCA ACGGATAAAG GCTTGTTTTT TGCCGCAGAT
CAAATTGATA CCTTGGACAA GTTAACCAAA GTAGATCGTT CAATGGGCGA TGTGCATGCA
AAGGGAAATC CTCATTTGCA TTTAGACCCC TTGCGGATGT TGACCGTTGC GCAGACCTTG
AGCGCTAAGC TTACTGAAGT TGATCCAGAA AATGCCAGTA AGTATGCCCA GTCGTTGAGC
GACTTTAGCC AACGTTGGCA GGCTAAAATG CCGCAATGGC AAGAACAAGC TAAAAACTTA
GCCGGCAAAA AAGTCATCGC TTATCATTCG AGCTTCCGTT ATTTATTTAA TTGGACTGGA
ATAGAGCAAG TGGCAGATCT TGAGCCTAAA CCTGGCTTAG CACCAACCAG CAGCCATTTA
GCCTCATTAC TTACTCGTGC TGAAAAAGGC GATGTAATGG CGGTAATAGT GGCATCATAC
CAAGATGAGC GAGGGGCTAA ATGGTTAGGT GAACGCGCAA ATCTGCCGGT ATTGGTGTTA
CCGATGTCGG TAGGTGGTAA CGATGAAAGT AAAGACTTAA TCAGTCTATA CGATAGTCTG
CTGACATTAT TAAATGGAGT GAAATAA
 
Protein sequence
MSLLFTATAK AELNVFACEP EYAALAQTLA PDARVYSATT AMQDPHQVQA RPSLIAKMRQ 
ADLVVCAGAD LEIGWLPMLQ MKSANPQVNS TDKGLFFAAD QIDTLDKLTK VDRSMGDVHA
KGNPHLHLDP LRMLTVAQTL SAKLTEVDPE NASKYAQSLS DFSQRWQAKM PQWQEQAKNL
AGKKVIAYHS SFRYLFNWTG IEQVADLEPK PGLAPTSSHL ASLLTRAEKG DVMAVIVASY
QDERGAKWLG ERANLPVLVL PMSVGGNDES KDLISLYDSL LTLLNGVK