Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3516 |
Symbol | |
ID | 4280410 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 4188797 |
End bp | 4189663 |
Gene Length | 867 bp |
Protein Length | 288 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638136329 |
Product | periplasmic solute binding protein |
Protein accession | YP_752183 |
Protein GI | 114564669 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.996617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGCTGC TGTTTACCGC GACAGCTAAA GCGGAACTGA ACGTGTTTGC ATGTGAACCT GAATATGCCG CATTAGCGCA AACTTTAGCA CCCGATGCTA GAGTGTATTC GGCCACCACA GCGATGCAAG ATCCACATCA AGTACAAGCA AGACCAAGCT TGATTGCTAA AATGCGCCAA GCTGATTTAG TTGTGTGCGC CGGGGCCGAT TTAGAAATTG GTTGGTTGCC AATGTTACAA ATGAAGTCTG CTAATCCTCA GGTTAATTCA ACGGATAAAG GCTTGTTTTT TGCCGCAGAT CAAATTGATA CCTTGGACAA GTTAACCAAA GTAGATCGTT CAATGGGCGA TGTGCATGCA AAGGGAAATC CTCATTTGCA TTTAGACCCC TTGCGGATGT TGACCGTTGC GCAGACCTTG AGCGCTAAGC TTACTGAAGT TGATCCAGAA AATGCCAGTA AGTATGCCCA GTCGTTGAGC GACTTTAGCC AACGTTGGCA GGCTAAAATG CCGCAATGGC AAGAACAAGC TAAAAACTTA GCCGGCAAAA AAGTCATCGC TTATCATTCG AGCTTCCGTT ATTTATTTAA TTGGACTGGA ATAGAGCAAG TGGCAGATCT TGAGCCTAAA CCTGGCTTAG CACCAACCAG CAGCCATTTA GCCTCATTAC TTACTCGTGC TGAAAAAGGC GATGTAATGG CGGTAATAGT GGCATCATAC CAAGATGAGC GAGGGGCTAA ATGGTTAGGT GAACGCGCAA ATCTGCCGGT ATTGGTGTTA CCGATGTCGG TAGGTGGTAA CGATGAAAGT AAAGACTTAA TCAGTCTATA CGATAGTCTG CTGACATTAT TAAATGGAGT GAAATAA
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Protein sequence | MSLLFTATAK AELNVFACEP EYAALAQTLA PDARVYSATT AMQDPHQVQA RPSLIAKMRQ ADLVVCAGAD LEIGWLPMLQ MKSANPQVNS TDKGLFFAAD QIDTLDKLTK VDRSMGDVHA KGNPHLHLDP LRMLTVAQTL SAKLTEVDPE NASKYAQSLS DFSQRWQAKM PQWQEQAKNL AGKKVIAYHS SFRYLFNWTG IEQVADLEPK PGLAPTSSHL ASLLTRAEKG DVMAVIVASY QDERGAKWLG ERANLPVLVL PMSVGGNDES KDLISLYDSL LTLLNGVK
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