Gene Sfri_3455 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3455 
Symbol 
ID4280352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4107847 
End bp4109196 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content39% 
IMG OID638136271 
Productouter membrane efflux protein 
Protein accessionYP_752125 
Protein GI114564611 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.414344 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAATGT TAAATCGTCC TCCAAAACTA GTTTTGGAGC TCTCGAGTCG TATTTATAAT 
ATACGGATTA TTTCGTGTGT TTTCCTTGTG GCATTCTCCT TTACAATCAG CGCAGCAAGA
GCATCATCGG CAGATCAAGC TATATCGCTG CCAACTGCAA TGCAGCGTTC ACTATCACAA
AATCCTTCTC TTAAATTTTT TCCGTATCGA ATTGATGCTC TGAATGGTCA AATGGAAACT
GCTAAATTAT CACCTGCTTA TGAATTAGGT TTTGATACTG AAAATGTTGG AGGAACTGGA
AATTACAACG GTATTAGTGG AGCTGAGTTC ACTATAGCTT TATCCTCAGT TTTTGAAATG
GATAACAAGC GTTTAGCTAG AATTGGGACT GTATCTTCTG AATTGTCATT ATTAGAAGCA
AGCAGGCAGG TTGAGTCACT GGCTTTACTT GGTGATGTTA CTCGTCGTTA TGTTGATGTA
CTTGCTGCAC AAGAACAAGT TGTTCTTGCA CAGGAGGCTA CTCAACTAAG CATTGATACT
TTGGATATTG TAAAAAAACG CGCTGCTGCA GGTGCTACAC CCGATGCAGA AGTTAAACGA
GCATTAGCAG CCTTAGAGCA AGCCAGGCTA TCATTATTTG CCGAACAGCA ACGCTTATCT
TACTTAAAAG TTTCGTTATC GAGTTTGTGG GGATCATCCT CACCTGACTT TGAGAATGTT
GAGGGGAATT TATTTCAGTT TGGGGAAGAT ATCTCATTTG AACAATTGTT TGAAAGAGTC
AAACTTAACC CTGCAATAGA GATTTTTGCA TCAGAAGCTC GTTTAAAAGA TGCTGAAATA
CGTGTTGCTA AAACACAGTC AAAATCTGAC ATTAGTTGGT CTGTGGGGGT TCGTCGAGCT
CAAGATACAA ACGATACAGC ACTCGTAGCT GGCTTCAGTA TGCCTTTATT TTCTGGCTCT
AGGAATCAAG GTGCTATTTC AACAGCCATT GCAGAAAAAA ATCAAGTATT CGTAAAACGT
GATGTCATGT TATTGGATAT GCATAATCAG TTATTTCGAG CTTTTTACAA TAGAAAACAA
GCTATTTTAG TCGTTAACTC ATTGCGTTCC ACCATCATCC CTTCTTTAGA GCAAGCACTG
ATTGAAACTC AAGATGCATA TCAGCGTGGA AGGTACGGTT ATCTGGATTA TGTGAGCTCT
CGTCAGGAGT TGTTAAGTGC AAGACGTACA TTAATTGAAG CTGCAGGTTC AGCATTAACT
TATGGTGCAG AAATCGAACA ATTGACATCA GAGCCTTTAG CTAGCTCGCA ATATAACGAG
AACATCAAAT TATCAGGAAT ATCTCAATGA
 
Protein sequence
MLMLNRPPKL VLELSSRIYN IRIISCVFLV AFSFTISAAR ASSADQAISL PTAMQRSLSQ 
NPSLKFFPYR IDALNGQMET AKLSPAYELG FDTENVGGTG NYNGISGAEF TIALSSVFEM
DNKRLARIGT VSSELSLLEA SRQVESLALL GDVTRRYVDV LAAQEQVVLA QEATQLSIDT
LDIVKKRAAA GATPDAEVKR ALAALEQARL SLFAEQQRLS YLKVSLSSLW GSSSPDFENV
EGNLFQFGED ISFEQLFERV KLNPAIEIFA SEARLKDAEI RVAKTQSKSD ISWSVGVRRA
QDTNDTALVA GFSMPLFSGS RNQGAISTAI AEKNQVFVKR DVMLLDMHNQ LFRAFYNRKQ
AILVVNSLRS TIIPSLEQAL IETQDAYQRG RYGYLDYVSS RQELLSARRT LIEAAGSALT
YGAEIEQLTS EPLASSQYNE NIKLSGISQ