Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3455 |
Symbol | |
ID | 4280352 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 4107847 |
End bp | 4109196 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638136271 |
Product | outer membrane efflux protein |
Protein accession | YP_752125 |
Protein GI | 114564611 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.414344 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTAATGT TAAATCGTCC TCCAAAACTA GTTTTGGAGC TCTCGAGTCG TATTTATAAT ATACGGATTA TTTCGTGTGT TTTCCTTGTG GCATTCTCCT TTACAATCAG CGCAGCAAGA GCATCATCGG CAGATCAAGC TATATCGCTG CCAACTGCAA TGCAGCGTTC ACTATCACAA AATCCTTCTC TTAAATTTTT TCCGTATCGA ATTGATGCTC TGAATGGTCA AATGGAAACT GCTAAATTAT CACCTGCTTA TGAATTAGGT TTTGATACTG AAAATGTTGG AGGAACTGGA AATTACAACG GTATTAGTGG AGCTGAGTTC ACTATAGCTT TATCCTCAGT TTTTGAAATG GATAACAAGC GTTTAGCTAG AATTGGGACT GTATCTTCTG AATTGTCATT ATTAGAAGCA AGCAGGCAGG TTGAGTCACT GGCTTTACTT GGTGATGTTA CTCGTCGTTA TGTTGATGTA CTTGCTGCAC AAGAACAAGT TGTTCTTGCA CAGGAGGCTA CTCAACTAAG CATTGATACT TTGGATATTG TAAAAAAACG CGCTGCTGCA GGTGCTACAC CCGATGCAGA AGTTAAACGA GCATTAGCAG CCTTAGAGCA AGCCAGGCTA TCATTATTTG CCGAACAGCA ACGCTTATCT TACTTAAAAG TTTCGTTATC GAGTTTGTGG GGATCATCCT CACCTGACTT TGAGAATGTT GAGGGGAATT TATTTCAGTT TGGGGAAGAT ATCTCATTTG AACAATTGTT TGAAAGAGTC AAACTTAACC CTGCAATAGA GATTTTTGCA TCAGAAGCTC GTTTAAAAGA TGCTGAAATA CGTGTTGCTA AAACACAGTC AAAATCTGAC ATTAGTTGGT CTGTGGGGGT TCGTCGAGCT CAAGATACAA ACGATACAGC ACTCGTAGCT GGCTTCAGTA TGCCTTTATT TTCTGGCTCT AGGAATCAAG GTGCTATTTC AACAGCCATT GCAGAAAAAA ATCAAGTATT CGTAAAACGT GATGTCATGT TATTGGATAT GCATAATCAG TTATTTCGAG CTTTTTACAA TAGAAAACAA GCTATTTTAG TCGTTAACTC ATTGCGTTCC ACCATCATCC CTTCTTTAGA GCAAGCACTG ATTGAAACTC AAGATGCATA TCAGCGTGGA AGGTACGGTT ATCTGGATTA TGTGAGCTCT CGTCAGGAGT TGTTAAGTGC AAGACGTACA TTAATTGAAG CTGCAGGTTC AGCATTAACT TATGGTGCAG AAATCGAACA ATTGACATCA GAGCCTTTAG CTAGCTCGCA ATATAACGAG AACATCAAAT TATCAGGAAT ATCTCAATGA
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Protein sequence | MLMLNRPPKL VLELSSRIYN IRIISCVFLV AFSFTISAAR ASSADQAISL PTAMQRSLSQ NPSLKFFPYR IDALNGQMET AKLSPAYELG FDTENVGGTG NYNGISGAEF TIALSSVFEM DNKRLARIGT VSSELSLLEA SRQVESLALL GDVTRRYVDV LAAQEQVVLA QEATQLSIDT LDIVKKRAAA GATPDAEVKR ALAALEQARL SLFAEQQRLS YLKVSLSSLW GSSSPDFENV EGNLFQFGED ISFEQLFERV KLNPAIEIFA SEARLKDAEI RVAKTQSKSD ISWSVGVRRA QDTNDTALVA GFSMPLFSGS RNQGAISTAI AEKNQVFVKR DVMLLDMHNQ LFRAFYNRKQ AILVVNSLRS TIIPSLEQAL IETQDAYQRG RYGYLDYVSS RQELLSARRT LIEAAGSALT YGAEIEQLTS EPLASSQYNE NIKLSGISQ
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