Gene Sfri_3442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3442 
Symbol 
ID4280340 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4093917 
End bp4095719 
Gene Length1803 bp 
Protein Length600 aa 
Translation table11 
GC content42% 
IMG OID638136259 
Productphage integrase family protein 
Protein accessionYP_752113 
Protein GI114564599 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTTGA TTGAGTTGAT ACTAACGGAC GTTGAGTTTG CGGAGCAGCA ATGTTCAAAG 
CCTAATCAAA GCACACTAGA GCGAGCGATT GATGGCACCC TGACGGGCAT TGTAACCTAT
GTAAAGTTAG CCAACGGTCA CTATCAAGTT TACTCTCGAT ATGAAGAAGA ACTATGGAAA
TTTCCTGCTG CTAAAGGGAC TAAAGGCACC ACCAAAAGTA ACCTTACACT TAATTTTGGC
ACAATAAATA ACCCTGAAAT GAAACAAATG GCAAAATGGG TCATATGGAA TAAATTAAAA
GAAGGATTAG CGGTCAACTC TTTACTACAT TCTTTAAGTT CTCTTAAAGG CTACTTTAAA
TGGGCCTTGA GTTCAGACAC AACTGCAACG CATGGCTTGA CTGCTTTTAC CTCTAGTGCT
TATGTTAAGT ATGTGAATAG ACTAAGCGCA AAGCGGAATG GCGAAATAAA GCCTCTTTCG
TTAACAACAA AAACGCTTAA GTTCCTCGCA GTGGAAAACC TTTATCAGTG TTGCAAAGCA
TTTTATTTTG TTAAAGAGCA TCCTTGGCCT GGTTCTGGTG CCAATATGCA GGCAGGACTG
ATTGGAGAGG CCGCTCAAAA AGCGAAAACC AAACCCAAAA CCCCTATCAT CCCTAACGAA
GTGCTAATTC CACTCTGTAA GTTTACAAAG TCATGTTTAG ACAGGGCTGA TGAAATTTTG
GCATCAAAAG GTAAGCGTGA ATCATTACTG CTGCGAGACA GTTGCATCTT CTGGTTGCTA
CTCACAACAG GTATGCGTAT CCATGAGGTT TTAGGTATTA AACGCGGAGC GTATCGCAGT
GAGACAAGAG ATGAGGTGAC GTATTACTAC ATTGAAACCG CGTCAGAGAA GACCCATACG
GGATTAGCTG AATGGATTGC GCCAGAGATT GCAACTCAAG CTATCGACAT TCTTGGTCGT
TATAGTGCGC CATTGCAAAA GCAGCTTGAA AATGACTTAT CAAAAGCAAG GGATAGTCAA
GACCATGTGG AAGTTAATAG GCTAGAACAA ATCTCAGACC ATATTTGTTT GTCGGTATCT
AAAAAAAGTA ACGCTATTAG CCTGTTGTCT GGATGTACAA TTACTGTTCA TAGGTTGCCT
AATTTATGTC AACAGATAGA TTGCAACTGG AATTTGTCAG CGCACCAGTT TCGCCGCACC
TTTGCCAACT ATGCAGTGCA TTCTGAATTG GGTGATTTAA GGGCACTAAA AGACCATTTT
AAACACTGGT CAATCACCAT GACGGCTCTG TATGCCTTTA ACGAAGATTT AGACGCAGAA
TTATTCGAAG AACTGCTCCG AGAAAAGTAT TTGATCGAAG AAGAAATCAA GCAAGACTGG
TTTGAACTAG ACACACCGAT TACGGGTGGC GATATGGCTA AAAACATCAA GAAAGTCCGT
GCAGATGGAG AGCTAATTAA AACTTTCGGC TCTCTCAGTG ATATGGCTAA AGCCTACTCT
AGCTCTATTC CTATCCGTTC AACAGGTATT GGATGGTGTA CCAATGATGA TGAATGTAAG
TGCGGTAAGC CCGATAGCTG CGAGAGCGGA ATTGTAGATA AACGGCATCT TCCCTACTGG
GAGGGGATGC TTGTTCAGCA AATAAAACTT ATGCAGTTGG ATGATATAGG GGAAGCAGGT
AGAGATGCAG CTAGGAAAGG TATGGAACGC TGTGAAAAGG TATTGAGTGC TTTAGGTATC
GATGTTGAAG CCATGAAGCA GAAGTTTAGC CAAAGAGATC TAATCGAGGT AGAGAATGTC
TAA
 
Protein sequence
MSLIELILTD VEFAEQQCSK PNQSTLERAI DGTLTGIVTY VKLANGHYQV YSRYEEELWK 
FPAAKGTKGT TKSNLTLNFG TINNPEMKQM AKWVIWNKLK EGLAVNSLLH SLSSLKGYFK
WALSSDTTAT HGLTAFTSSA YVKYVNRLSA KRNGEIKPLS LTTKTLKFLA VENLYQCCKA
FYFVKEHPWP GSGANMQAGL IGEAAQKAKT KPKTPIIPNE VLIPLCKFTK SCLDRADEIL
ASKGKRESLL LRDSCIFWLL LTTGMRIHEV LGIKRGAYRS ETRDEVTYYY IETASEKTHT
GLAEWIAPEI ATQAIDILGR YSAPLQKQLE NDLSKARDSQ DHVEVNRLEQ ISDHICLSVS
KKSNAISLLS GCTITVHRLP NLCQQIDCNW NLSAHQFRRT FANYAVHSEL GDLRALKDHF
KHWSITMTAL YAFNEDLDAE LFEELLREKY LIEEEIKQDW FELDTPITGG DMAKNIKKVR
ADGELIKTFG SLSDMAKAYS SSIPIRSTGI GWCTNDDECK CGKPDSCESG IVDKRHLPYW
EGMLVQQIKL MQLDDIGEAG RDAARKGMER CEKVLSALGI DVEAMKQKFS QRDLIEVENV