| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3384 |
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| Symbol | |
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| ID | 4280286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4029981 |
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| End bp | 4032470 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638136205 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_752059 |
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| Protein GI | 114564545 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGTTAT CGGGTTTAAC CAATACTGTT TATAAAATTC TGATTATTGA CGATAATATT
CAAAATATAT TCATGCTGGA AGATATTTTG TCGCCTCTTG GCAATATCTT TTTTTCAGAG
TCTGGCACTA ATGCACTCGC GTTAGTGGAT AAAATTAAGC CTGATGTCAT TTTACTCGAT
ATTGAGATGC CTGACATGGA TGGATGGGAA GTGTGTCGTA CACTCAAAGC TAATCCATTA
TTTAGCGATA TTCCAATTAT TTTTATTACC GGCCACACAG AACCTGAATT TGAAAGGTTA
GCGCTAGAAA GTGGTGGAGT CGATTTTATT ACTAAACCTT TTAACGCTTC TATATGTTGC
TTAAGGGTTC ATACACAACT TAAATTTAGA CAGCAAAATC AACTGATTAT TAAAGCTAAA
GAAGAGTTAC AACAATTAGT TAATCAAGTC CCTATGCTTA TTACTTATTG GGATGATTTA
GGTCAAAATT TATTTAGTAA TGACAACACT GGTTTATGGT TTGATAGCTT GGTCGGTGAT
GTTAAAAACA AGCATATTTC GACTATTTTT CCTGAAGCGC TCAGCAATGC AATTTTAAAT
CATCACCGTC ATATTACCTC AGATGCATTA AAGTACATTG TCACCGTCCC TCAAAGTGTT
GGTTTGAGTT TTTATGAAGT CTTTCAGTCC AAAATGAAAT CAAGTGCTGG AGTCGATGGC
TACTTGGTTA CTGTTGTTGA CGTCTCTGAA GTAAAGCATG CAAAGCAGGC GCTGTACTCT
GAAAAGGAGC GTCTTCGAGT AACACTCAAT TCTATTGGTG ATGCTGTTAT TGCGACTGAC
ACAAGAGGGC TTATTACTTT TATGAACCCA ATTGCGGAGC GCATGACAGG TTGGCGGTTA
AAAGATGCAT TACATCAAAA AATTGAAGAT GTTATGCATT TGAAAGATTC TGATACTCAG
CAGCCATTAT TGAACCCGTT ATATTTAGCT CTTCGCGAGC AGCGCATTGT GGCAATGGCG
CTAAACAGCC TACTTACTTC ACGTGGAGGG CATGTTTTTT ATGTGGAGGA TTCAGCCGCT
CCAATCCGTA ACGAAAATGG TGAAATGATT GGCGCCATTA TGGTGTTTCA TGATGTGAGT
GAAGCGATGG CGATGGCGAT GAAAATGAGC CATTTAGCCA ACCATGATCA GTTAACTGAT
TTACCTAATC GGATATTACT TCAAGATAGG TTAAGCGTCG CGTGTTCTAC AGCAAGATCC
TATGGCACCA AAGCTGCTGC ACTATTAATC GATATTGATC ATTTTAAATT CCTTAATGAT
TCCTTAGGCC ACCAATATGG TGATGAGCTC ATTTGTATGA TGGCAAGACG ACTCCGCTCG
TTAATACCTG CATCGTATAC ATTGGCGAGA TTAGGTGGTG ACGAATTTGT GATTTTAATG
AGCGAGACTC GCTCTGTTGA GGCTTCTTCG CAATTAGCAT CTACATTAGT TGAAGCGATG
CATGAACCTT TTGTTCTTGA TAATCAGAAG TTTAATGTGT CGATAAGTAT TGGTGTTAGT
GTGTTCCCAA ATGATGCTGT AGATGCCGAG GAATTAATGA GACACGCGGA CGTGGCAATG
TACCGTGCCA AACAGGAAGG CCGAAATCGC TTCTGCTTTT TCTCGCATGA TTTAGAAAGT
TCGCTTATGG AGCGCCATCA TTTAGAGACT CGCTTAAGAA AAGCATTAAT TAATGATGAA
CTTTTTGTGC ATTATCAACC TAAAATTGAT TTACAGACAA ACATTATTAT TGGTGCTGAG
GCTCTCGTTA GACTGGCCAA TGATGAGGGT GAGCTTATCT CTCCCGCAGA GTTTATTCCA
TTAGCGGAAG AGTCCGGTTT AATTATTATG CTAGGTAAAC AAGTGCTTAA TAAGGCTTGT
GCTGAAGCTA AACGTTGGTT AGAAATGGGC CATACGATTC CTATCTCGGT GAATGTGGCC
GCGGCACAGT TTGCTGATCC CGACTTAGCC GGTATGATCA AGAAAGCACT ATTGGACCAT
AATTTACCGG CGCATTTACT TGAATTGGAA ATTACCGAAA CTGCATTGAT GATTGATGCA
GCGGACATGC AAAACAAGTT GAGTGAGTTA ATATCATTAG GGATTAAGAT TGCTATTGAC
GATTTTGGTA CTGGTTATTC CAGCTTGGCC TATTTGAAAA AGTTTAATGT TGATGTCATG
AAAATTGATA TGTCGTTTGT GAAAGACATG CTCAACAATA AGCACGATTA TGAAATTGTG
AAGACGATTA TTTCATTGGG CAAATCGATG GGGTTAGTGC TAATTGCCGA AGGTGTTGAA
ACTAAAGAGC AAAGCCACGC ATTAGTTGAA TTGGGATGTT TTATGGGCCA AGGTTATTTG
TTTAGTCGCC CACTCAATAG TACAGATTTT GAAGCCTTCA TATCGCAGAG CAGCAAATGT
GTTAAAGGTA TCAATTCCGT CGATGAATAA
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| Protein sequence | MLLSGLTNTV YKILIIDDNI QNIFMLEDIL SPLGNIFFSE SGTNALALVD KIKPDVILLD
IEMPDMDGWE VCRTLKANPL FSDIPIIFIT GHTEPEFERL ALESGGVDFI TKPFNASICC
LRVHTQLKFR QQNQLIIKAK EELQQLVNQV PMLITYWDDL GQNLFSNDNT GLWFDSLVGD
VKNKHISTIF PEALSNAILN HHRHITSDAL KYIVTVPQSV GLSFYEVFQS KMKSSAGVDG
YLVTVVDVSE VKHAKQALYS EKERLRVTLN SIGDAVIATD TRGLITFMNP IAERMTGWRL
KDALHQKIED VMHLKDSDTQ QPLLNPLYLA LREQRIVAMA LNSLLTSRGG HVFYVEDSAA
PIRNENGEMI GAIMVFHDVS EAMAMAMKMS HLANHDQLTD LPNRILLQDR LSVACSTARS
YGTKAAALLI DIDHFKFLND SLGHQYGDEL ICMMARRLRS LIPASYTLAR LGGDEFVILM
SETRSVEASS QLASTLVEAM HEPFVLDNQK FNVSISIGVS VFPNDAVDAE ELMRHADVAM
YRAKQEGRNR FCFFSHDLES SLMERHHLET RLRKALINDE LFVHYQPKID LQTNIIIGAE
ALVRLANDEG ELISPAEFIP LAEESGLIIM LGKQVLNKAC AEAKRWLEMG HTIPISVNVA
AAQFADPDLA GMIKKALLDH NLPAHLLELE ITETALMIDA ADMQNKLSEL ISLGIKIAID
DFGTGYSSLA YLKKFNVDVM KIDMSFVKDM LNNKHDYEIV KTIISLGKSM GLVLIAEGVE
TKEQSHALVE LGCFMGQGYL FSRPLNSTDF EAFISQSSKC VKGINSVDE
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