Gene Sfri_3379 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3379 
Symbol 
ID4280281 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp4024838 
End bp4025281 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content44% 
IMG OID638136200 
ProductPTS IIA-like nitrogen-regulatory protein PtsN 
Protein accessionYP_752054 
Protein GI114564540 
COG category[G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) 
TIGRFAM ID[TIGR01419] PTS IIA-like nitrogen-regulatory protein PtsN 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.655095 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACTTT GTACCATTCT GCAGCCGGAA TGCACTACCT GTGCCACACC GGGCAGTAAG 
AAAAAAGTAC TGGAACTCAT CAGCAATTTA GTCGCTGCCC AGTACCCAAC CCTGTCTTCG
CAAGAGGTTT TTGAAAGCCT GTTAGCGAGA GAGAAAATGG GTAGCACAGG TATAGGAAAT
GGCATTGCGA TACCTCATGG TCGATTAACG ACCATCGATC ACCCTATCGC GATATTTATT
AAATGTGAAG AAGCCATTGC CTTTGATGCA ATCGATAAAC AGCCCGTGGA TCTTTTATTT
GCTTTGTTAG TACCTGCCGA CCAGTGCCAA CAACATTTAG GCACGTTATC AAGCATGGCC
CAAAAGTTAA GCGATAAGCA AATATTGAAA CAGCTTCGCA AAACTCACGA CGCAACAGAA
CTTTATCAGG TTATTACTGC ATGA
 
Protein sequence
MELCTILQPE CTTCATPGSK KKVLELISNL VAAQYPTLSS QEVFESLLAR EKMGSTGIGN 
GIAIPHGRLT TIDHPIAIFI KCEEAIAFDA IDKQPVDLLF ALLVPADQCQ QHLGTLSSMA
QKLSDKQILK QLRKTHDATE LYQVITA